Structure of PDB 5whg Chain A Binding Site BS01

Receptor Information

>5whg Chain A (length=212) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

LKKNDLYIFDLSEQLLNSLKLMSCSVCQMSHYQTDYHLMNVKRNLRGSPY
IYFKSKYVLAIYKSLFNKRSLSNPNEALTFWNSQENPMAISALFMVGGGH
FAGAIVSHQRLNETLIEQAVNFLEHKTFHRYTSALKTDIQGVLKDWEPYL
SKCDNIFIRARNVSDKKIFTDNTVLNKGDERIKSFPFTTNRPTVLELKKA
WCELSYLKILPK

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

5whg Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5whg Sterol Oxidation Mediates Stress-Responsive Vms1 Translocation to Mitochondria.
Resolution	2.7 Å
Binding residue (original residue number in PDB)	C74 H90 H96
Binding residue (residue number reindexed from 1)	C24 H31 H37
Annotation score	4

Enzymatic activity

Enzyme Commision number

3.1.-.-

External links

PDB	RCSB:5whg, PDBe:5whg, PDBj:5whg
PDBsum	5whg
PubMed	29149595
UniProt	Q04311\|VMS1_YEAST tRNA endonuclease VMS1 (Gene Name=VMS1)

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