Structure of PDB 5w1o Chain A Binding Site BS01

Receptor Information
>5w1o Chain A (length=427) Species: 10566 (Human papillomavirus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQ
YRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISG
HPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHW
GKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSE
VPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGE
NVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGH
NNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEE
YDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNGGGSGAEDPLKKYTFW
EVNLKEKFSADLDQFPLGRKFLLQAGL
Ligand information
Ligand IDJHM
InChIInChI=1S/C6H12O8S/c7-3-1-5(8)14-4(6(3)9)2-13-15(10,11)12/h3-9H,1-2H2,(H,10,11,12)/t3-,4-,5+,6+/m1/s1
InChIKeyGDISEEDIIABUSR-ZXXMMSQZSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C1C(C(C(OC1O)COS(=O)(=O)O)O)O
OpenEye OEToolkits 1.7.0C1[C@H]([C@@H]([C@H](O[C@@H]1O)COS(=O)(=O)O)O)O
CACTVS 3.370O[CH]1C[CH](O)[CH](O)[CH](CO[S](O)(=O)=O)O1
ACDLabs 12.01O=S(=O)(O)OCC1OC(O)CC(O)C1O
CACTVS 3.370O[C@@H]1C[C@@H](O)[C@H](O)[C@@H](CO[S](O)(=O)=O)O1
FormulaC6 H12 O8 S
Name2-deoxy-6-O-sulfo-alpha-D-glucopyranose;
2-deoxy-6-O-sulfo-alpha-D-arabino-hexopyranose;
2-deoxy-6-O-sulfo-alpha-D-glucose;
2-deoxy-6-O-sulfo-D-glucose;
2-deoxy-6-O-sulfo-glucose
ChEMBL
DrugBank
ZINCZINC000058650367
PDB chain5w1o Chain G Residue 3 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5w1o Structural basis of oligosaccharide receptor recognition by human papillomavirus.
Resolution2.8 Å
Binding residue
(original residue number in PDB)
T266 V267
Binding residue
(residue number reindexed from 1)
T247 V248
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

View graph for
Molecular Function

View graph for
Cellular Component
External links
PDB RCSB:5w1o, PDBe:5w1o, PDBj:5w1o
PDBsum5w1o
PubMed21115492
UniProtQ81007

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