Structure of PDB 5vqh Chain A Binding Site BS01

Receptor Information
>5vqh Chain A (length=213) Species: 7091 (Bombyx mori) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NLYFQSNAGPSIEVYVSAVSSPSRFWVQFVGPQVAQLDDLVAHMTEYYSK
KENREAHTLRHVSVGQVVAAVFRHDGRWYRARVHDIRPNEFDSSQQVADV
FYLDYGDSEYVATHELCELRADLLRLRFQAMECFLAGVRPASDKWHPQAV
ERFEELTQVARWKALVSRTCTYKKTATAEGEKDKEIPGIKLFDVTDEGEL
DVGAVLVAEGWAV
Ligand information
Ligand ID2MR
InChIInChI=1S/C8H18N4O2/c1-10-8(11-2)12-5-3-4-6(9)7(13)14/h6H,3-5,9H2,1-2H3,(H,13,14)(H2,10,11,12)/t6-/m0/s1
InChIKeyHVPFXCBJHIIJGS-LURJTMIESA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CN/C(=N/C)/NCCC[C@@H](C(=O)O)N
ACDLabs 10.04O=C(O)C(N)CCCN\C(=N/C)NC
CACTVS 3.341CNC(NCCC[CH](N)C(O)=O)=NC
OpenEye OEToolkits 1.5.0CNC(=NC)NCCCC(C(=O)O)N
CACTVS 3.341CNC(NCCC[C@H](N)C(O)=O)=NC
FormulaC8 H18 N4 O2
NameN3, N4-DIMETHYLARGININE
ChEMBL
DrugBankDB02302
ZINCZINC000005965908
PDB chain5vqh Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5vqh Structural studies of the Tudor domain from the Bombyx homolog of Drosophila PAPI: Implication to piRNA biogenesis
Resolution2.4 Å
Binding residue
(original residue number in PDB)		D66 Y70 Y93 Y96 D98
Binding residue
(residue number reindexed from 1)		D75 Y79 Y102 Y105 D107
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:5vqh, PDBe:5vqh, PDBj:5vqh
PDBsum5vqh
PubMed
UniProtH9JD76|TDRKH_BOMMO Tudor and KH domain-containing protein homolog (Gene Name=PAPI)

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