Structure of PDB 5vpu Chain A Binding Site BS01

Receptor Information
>5vpu Chain A (length=509) Species: 470 (Acinetobacter baumannii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AGKIPHVLVIMDGVGHREAIEDNAFLAAKTPNLTAMKAKHPNSLISGSGE
DVGLPDGQMGNSEVGHMNLGAGRVLYQDFTRITKDIRTGAFFEHEVLVDA
VEKAKAAGGAVHIMGLLSEGGVHSHEDHIVAMCELALKRGAKVYLHAFLD
GRDTPPRSAQPSLEKLDALFAQYEGKGRIATMIGRYFAMDRDNRWDRVEQ
AYRLLTEGEAVRTATTAVEGLELAYAANENDEFVKATRIGEIAKVQDGDS
VVFMNFRADRAREITRAFVEKDFAGFERKVVPNLSKFVMLTRYQASIDAP
VAYMPEELKNSLGEYLSSLGKTQLRIAETEKYAHVTFFFSGGREDEYPGE
KRILIPSPNVATYDLKPEMSAYEVTDELVKAINSGEYDLLVVNYANGDMV
GHTGVFDAAVKAVEAVDTCLGRVYEAVMAKKGHMLITADHGNVEQMQDYE
SGQVHTQHTTELVPFIYVGPTQATIAEGGVLADVAPTILNLMQIPVPAEM
QGRNLITLS
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain5vpu Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5vpu Crystal Structure of 2,3-bisphosphoglycerate-independent phosphoglycerate mutase bound to 3-phosphoglycerate, from Acinetobacter baumannii
Resolution1.5 Å
Binding residue
(original residue number in PDB)		D403 H407 H463
Binding residue
(residue number reindexed from 1)		D398 H402 H458
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) D17 S67 D158 R262 K336 D403 H407 D444 H445 H463
Catalytic site (residue number reindexed from 1) D12 S62 D153 R257 K331 D398 H402 D439 H440 H458
Enzyme Commision number 5.4.2.12: phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004619 phosphoglycerate mutase activity
GO:0016853 isomerase activity
GO:0030145 manganese ion binding
GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity
GO:0046872 metal ion binding
Biological Process
GO:0006007 glucose catabolic process
GO:0006096 glycolytic process
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5vpu, PDBe:5vpu, PDBj:5vpu
PDBsum5vpu
PubMed
UniProtA0A059ZPG7

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