Structure of PDB 5vn5 Chain A Binding Site BS01

Receptor Information

>5vn5 Chain A (length=332) Species: 627192 (Sphingobium sp. SYK-6) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MIIDCHGHVSAPVELWAYKASLLAHRGSHGRGGVKVTDEQIIAAAHHKET
WPDGHIELLHNHGTDMQLISPRPFQMMNSAKPARVVHWFCEEVNTLIHRQ
CTLIPEMFIPVAGLPQVAGEPIENVFAEMDRCVSMGFKGFLLNPDPYENG
AEEAPPLGDRYWYPLYEKLCELDLPAHIHATGSQSERSPYSLHFINEETI
ATYNLCTSSVFDDFPQLKVVVSHGGGAIPYQLGRFESQSRRSKHLFSERM
AKLYFDTVLYTEGALRLLIETVGPERCLFGSECPGVGSTIDPATGKQMDH
IAPFIQKFDFLSDADKKLIFEDNARKVFNLEV

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

5vn5 Chain A Residue 400 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5vn5 The bacterialmeta-cleavage hydrolase LigY belongs to the amidohydrolase superfamily, not to the alpha / beta-hydrolase superfamily.
Resolution	1.9 Å
Binding residue (original residue number in PDB)	H6 H8 H179 E282
Binding residue (residue number reindexed from 1)	H6 H8 H179 E282
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0016787	hydrolase activity
GO:0016829	lyase activity
GO:0016831	carboxy-lyase activity
GO:0046872	metal ion binding

	Biological Process
GO:0019748	secondary metabolic process

	Cellular Component
GO:0005737	cytoplasm

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Molecular Function

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Cellular Component

External links

PDB	RCSB:5vn5, PDBe:5vn5, PDBj:5vn5
PDBsum	5vn5
PubMed	28935670
UniProt	G2IN02

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