Structure of PDB 5vje Chain A Binding Site BS01

Receptor Information
>5vje Chain A (length=339) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAA
KVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHY
GVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESL
QENIEICSKYLERMSKIGMTLEIELGYTQPEDVDYAYTELSKISPRFTIA
ASFGNVHGVYKPGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGS
TAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKG
EDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDVL
Ligand information
Ligand IDGOS
InChIInChI=1S/C6H16O12P2/c7-3(1-17-19(11,12)13)5(9)6(10)4(8)2-18-20(14,15)16/h3-10H,1-2H2,(H2,11,12,13)(H2,14,15,16)/t3-,4+,5-,6-/m1/s1
InChIKeyWOYYTQHMNDWRCW-JGWLITMVSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6C(C(C(C(C(COP(=O)(O)O)O)O)O)O)OP(=O)(O)O
OpenEye OEToolkits 2.0.6C([C@H]([C@H]([C@@H]([C@H](COP(=O)(O)O)O)O)O)O)OP(=O)(O)O
CACTVS 3.385O[C@@H](CO[P](O)(O)=O)[C@@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O
ACDLabs 12.01C(C(O)C(O)C(C(COP(=O)(O)O)O)O)OP(O)(=O)O
CACTVS 3.385O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O
FormulaC6 H16 O12 P2
NameD-Glucitol-1,6-bisphosphate;
1,6-di-O-phosphono-D-glucitol
ChEMBLCHEMBL404748
DrugBank
ZINCZINC000013682453
PDB chain5vje Chain A Residue 403 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5vje Active site remodeling during the catalytic cycle in metal-dependent fructose-1,6-bisphosphate aldolases.
Resolution1.65 Å
Binding residue
(original residue number in PDB)
S61 D109 H110 H226 G227 H264 G265 S267 N286 D288 T289
Binding residue
(residue number reindexed from 1)
S61 D109 H110 H207 G208 H245 G246 S248 N267 D269 T270
Annotation score3
Binding affinityMOAD: Ki=60uM
Enzymatic activity
Catalytic site (original residue number in PDB) D109 H110 H226 H264 N286
Catalytic site (residue number reindexed from 1) D109 H110 H207 H245 N267
Enzyme Commision number 4.1.2.13: fructose-bisphosphate aldolase.
Gene Ontology
Molecular Function
GO:0004332 fructose-bisphosphate aldolase activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016829 lyase activity
GO:0016832 aldehyde-lyase activity
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0006094 gluconeogenesis
GO:0006096 glycolytic process
Cellular Component
GO:0005829 cytosol

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:5vje, PDBe:5vje, PDBj:5vje
PDBsum5vje
PubMed29593097
UniProtP0AB71|ALF_ECOLI Fructose-bisphosphate aldolase class 2 (Gene Name=fbaA)

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