Structure of PDB 5vc1 Chain A Binding Site BS01

Receptor Information

>5vc1 Chain A (length=153) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

WTYHYSEKPMNWQRARRFCRDQYTDLVAIQNKAEIEYLEKTLPFSRSYYW
IGIRKIGGIWTWVGTNKSLTEEAENWGDGEPNNKKNKEDCVEIYIKRNKD
AGKWNDDACHKLKAALCYTASCQPWSCSGHGECVEIINQYTCNCDVGYYG
PQC

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

5vc1 Chain A Residue 209 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5vc1 Reducing Macro- and Microheterogeneity of N-Glycans Enables the Crystal Structure of the Lectin and EGF-Like Domains of Human L-Selectin To Be Solved at 1.9 angstrom Resolution.
Resolution	1.94 Å
Binding residue (original residue number in PDB)	E80 N82 E88 N105 D106
Binding residue (residue number reindexed from 1)	E80 N82 E88 N105 D106
Annotation score	4

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:5vc1, PDBe:5vc1, PDBj:5vc1
PDBsum	5vc1
PubMed	28489325
UniProt	P14151\|LYAM1_HUMAN L-selectin (Gene Name=SELL)

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