Structure of PDB 5uph Chain A Binding Site BS01

Receptor Information
>5uph Chain A (length=316) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DSWEKPPLPVYTQFYFFNVTNPEEILRGETPRVEEVGPYTYRELRNSNKA
YVFERDQSVGDPKIDLIRTLNIPVLTVIEWSQVHFLREIIEAMLKAYQQK
LFVTHTVDELLWGYKDEILSLIHVFRPDISPYFGLFYEKNGTNDGDYVFL
TKIVEWNGKTSPLITKDEVLYVFPSDFCRSVYITFSDYESVQGLPAFRYK
VPAEILGSGVLNVSICKNGAPIIMSFPHFYQADERFVSAIEGMHPNQEDH
ETFVDINPLTGIILKAAKRFQINIYVKKLDDFVETGDIRTMVFPVMYLNE
SVHIDKETASRLKSMI
Ligand information
Ligand IDCLR
InChIInChI=1S/C27H46O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h9,18-19,21-25,28H,6-8,10-17H2,1-5H3/t19-,21+,22+,23-,24+,25+,26+,27-/m1/s1
InChIKeyHVYWMOMLDIMFJA-DPAQBDIFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC(C)CCCC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)O)C)C
CACTVS 3.341CC(C)CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4C[C@@H](O)CC[C@]4(C)[C@H]3CC[C@]12C
ACDLabs 10.04OC4CCC3(C(=CCC2C1C(C(C(C)CCCC(C)C)CC1)(C)CCC23)C4)C
OpenEye OEToolkits 1.5.0CC(C)CCC[C@@H](C)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2CC=C4[C@@]3(CC[C@@H](C4)O)C)C
CACTVS 3.341CC(C)CCC[CH](C)[CH]1CC[CH]2[CH]3CC=C4C[CH](O)CC[C]4(C)[CH]3CC[C]12C
FormulaC27 H46 O
NameCHOLESTEROL
ChEMBLCHEMBL112570
DrugBankDB04540
ZINCZINC000003875383
PDB chain5uph Chain A Residue 518 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5uph Lysosomal integral membrane protein-2 as a phospholipid receptor revealed by biophysical and cellular studies.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		V60 E230 V268 T365 V367 K381
Binding residue
(residue number reindexed from 1)		V10 E155 V172 T252 V254 K268
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005044 scavenger receptor activity
Cellular Component
GO:0005764 lysosome
GO:0016020 membrane

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5uph, PDBe:5uph, PDBj:5uph
PDBsum5uph
PubMed29199275
UniProtQ14108|SCRB2_HUMAN Lysosome membrane protein 2 (Gene Name=SCARB2)

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