Structure of PDB 5ukh Chain A Binding Site BS01

Receptor Information

>5ukh Chain A (length=321) Species: 862967 (Streptococcus intermedius B196) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

AYAALKDLTLSKQDKVFLEHLMTEYGFDSTTARQILKLKQGLERKFSSIF
DDYTQEERDYLLFRIIGSVSYNGVKWDETAGYLSRYFYKEVVSNPVTGEK
QKVPKSLLDIFQELGLSKAEAKQLQYNLSLQHEMAGGTLSTTGDMVKQDP
DYYETAKNSYKLVYGTTEGFDKFWDERLKAYSNDGRGNADFTHQSITMAT
HLNPTGWEGDTTYNANERKPSIGEDDYKADLDSVNIIGRMKKGQSYQSAM
SSYYSDVQKGHSVREKEFLKNKDWEKVKKTIYDSLVPNGINKNADSVVKD
YIAKNYPDVSKFLSRLESVAG

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

5ukh Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5ukh A broadly distributed toxin family mediates contact-dependent antagonism between gram-positive bacteria.
Resolution	1.98 Å
Binding residue (original residue number in PDB)	D401 D454 D455
Binding residue (residue number reindexed from 1)	D190 D225 D226
Annotation score	4

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:5ukh, PDBe:5ukh, PDBj:5ukh
PDBsum	5ukh
PubMed	28696203
UniProt	T1ZG69

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