Structure of PDB 5u93 Chain A Binding Site BS01

Receptor Information
>5u93 Chain A (length=160) Species: 629395 (Bacteria Latreille et al. 1825) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KLLKDDFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLND
RPYRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIP
GFNASAGQPHWRLGSMGMAQARQVIGQLEHESSQHVPFANEMAELLFGQL
VMLLNRHRYT
Ligand information
Ligand IDRM4
InChIInChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3-,4+,5+,6-/m0/s1
InChIKeySHZGCJCMOBCMKK-YJRYQGEOSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)O)O)O)O
CACTVS 3.341C[C@@H]1O[C@H](O)[C@H](O)[C@H](O)[C@H]1O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)C
OpenEye OEToolkits 1.5.0CC1C(C(C(C(O1)O)O)O)O
CACTVS 3.341C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
FormulaC6 H12 O5
Namebeta-L-rhamnopyranose;
beta-L-rhamnose;
6-deoxy-beta-L-mannopyranose;
L-rhamnose;
rhamnose
ChEMBL
DrugBank
ZINCZINC000003861281
PDB chain5u93 Chain A Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5u93 Structure of the Regulatory Domain of the AraC Family Transcriptional Activator RhaR
Resolution1.999 Å
Binding residue
(original residue number in PDB)		R25 Q28 H34 H36 E40 H74
Binding residue
(residue number reindexed from 1)		R20 Q23 H29 H31 E35 H69
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0006355 regulation of DNA-templated transcription

View graph for
Biological Process
External links
PDB RCSB:5u93, PDBe:5u93, PDBj:5u93
PDBsum5u93
PubMed
UniProtP09378|RHAR_ECOLI HTH-type transcriptional activator RhaR (Gene Name=rhaR)

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