Structure of PDB 5tp4 Chain A Binding Site BS01

Receptor Information

>5tp4 Chain A (length=405) Species: 398577 (Burkholderia ambifaria MC40-6) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

DLLEIDGARLWRSLADMARIGATPRGGVRRLALTDDDRRGRDLFAQWCRD
AGMTVSVDAVGNLFARRDGADAQAAPVLIGSHLDTQPEGGRFDGVYGVLA
GLEVVRTLNDAGIVTDKPLEIVSWTNEEGARFAPAMLGSAVFTGALPLDD
ALARQDAEGITLGAALDACGCRGTRAPGGAVDAYFEAHIEQGPVLEANGT
TIGIVTGGQAIRWLDVRVTGVAAHAGTTPMPYRKDAYFASAQMALELERI
VAGHAPRGLATIGQAGIRNASRNTIAGDVTFTVDLRHHDDAQVDAMERAL
RDACARVAAARGVQVAIDTCWRSPATPFDRGCVELVARAAEAFGYTNERI
VSGAGHDAILLARRVPTAMVFIPCVDAEDALPDDVTRGTNVLLNAVLARA
GVATR

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

5tp4 Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5tp4 Crystal structure of a hydantoinase/carbamoylase family amidase from Burkholderia ambifaria
Resolution	1.7 Å
Binding residue (original residue number in PDB)	H84 H190
Binding residue (residue number reindexed from 1)	H82 H188
Annotation score	1

Enzymatic activity

Enzyme Commision number

3.5.1.87: N-carbamoyl-L-amino-acid hydrolase.

Gene Ontology

	Molecular Function
GO:0016787	hydrolase activity
GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
GO:0046872	metal ion binding
GO:0050538	N-carbamoyl-L-amino-acid hydrolase activity

View graph for
Molecular Function

External links

PDB	RCSB:5tp4, PDBe:5tp4, PDBj:5tp4
PDBsum	5tp4
PubMed
UniProt	B1YW99

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