Structure of PDB 5tme Chain A Binding Site BS01

Receptor Information
>5tme Chain A (length=435) Species: 39947 (Oryza sativa Japonica Group) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QVLLLPFPATNPMLQFGRRLAYHGLRPTLVTTRYVLSTTPPPGDPFRVAA
ISDGFDDASGMAALPDPGEYLRTLEAHGARTLAELLLSEARAGRPARVLV
YDPHLPWARRVARAAGVATAAFLSQPCAVDLIYGEVCARRLALPVTPTDA
RGLYARGVLGVELGPDDVPPFVAAPELTPAFCEQSIEQFAGLEDDDDVLV
NSFSDLEPKEAAYMESTWRAKTIGPSLPSFYLDDGRRSTVPCMEWLDKQP
PRSVVLVSYGTVSTFDVAKLEELGNGLCNSGKPFLWVVRSNEEHKLSVQL
RKKCEKRGLIVPFCPQLEVLAHKATGCFLSHCGWNSTLEAIVNGVPLVAM
PHWADQPTISKYVESLWGMGVRVQLDKSGILQREEVERCIREVMDGDRKE
DYRRNATRLMKKAKESMQEGGSSDKNIAEFAAKYS
Ligand information
Ligand IDUDP
InChIInChI=1S/C9H14N2O12P2/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(22-8)3-21-25(19,20)23-24(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKeyXCCTYIAWTASOJW-XVFCMESISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)OP(=O)(O)O)O)O
CACTVS 3.370O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
CACTVS 3.370O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
OpenEye OEToolkits 1.7.0C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)O)O)O
ACDLabs 12.01O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O
FormulaC9 H14 N2 O12 P2
NameURIDINE-5'-DIPHOSPHATE
ChEMBLCHEMBL130266
DrugBankDB03435
ZINCZINC000004490939
PDB chain5tme Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5tme Crystal Structure of Os79 (Os04g0206600) from Oryza sativa: A UDP-glucosyltransferase Involved in the Detoxification of Deoxynivalenol.
Resolution1.78 Å
Binding residue
(original residue number in PDB)		T291 F343 C344 Q346 H361 G363 N365 S366 E369
Binding residue
(residue number reindexed from 1)		T261 F313 C314 Q316 H331 G333 N335 S336 E339
Annotation score4
Enzymatic activity
Enzyme Commision number 2.4.1.-
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0008194 UDP-glycosyltransferase activity
GO:0016757 glycosyltransferase activity
GO:0080043 quercetin 3-O-glucosyltransferase activity
GO:0080044 quercetin 7-O-glucosyltransferase activity
Biological Process
GO:0009636 response to toxic substance
GO:0098754 detoxification
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5tme, PDBe:5tme, PDBj:5tme
PDBsum5tme
PubMed27715009
UniProtQ7XT97|UGT79_ORYSJ UDP-glycosyltransferase 79 (Gene Name=UGT79)

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