Structure of PDB 5tc7 Chain A Binding Site BS01

Receptor Information
>5tc7 Chain A (length=273) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLL
ARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIV
IIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKK
LGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEA
GICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQI
GSTEWSETLHNLKNMAQFSVLLP
Ligand information
Ligand IDMTH
InChIInChI=1S/C12H16N4O3S/c1-20-4-7-8(17)9(18)12(19-7)16-3-2-6-10(13)14-5-15-11(6)16/h2-3,5,7-9,12,17-18H,4H2,1H3,(H2,13,14,15)/t7-,8-,9-,12-/m1/s1
InChIKeyWBPLMFVTQMIPLW-MFYTUXHUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CSC[C@@H]1[C@H]([C@H]([C@@H](O1)n2ccc3c2ncnc3N)O)O
CACTVS 3.341CSC[CH]1O[CH]([CH](O)[CH]1O)n2ccc3c(N)ncnc23
CACTVS 3.341CSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2ccc3c(N)ncnc23
ACDLabs 10.04S(C)CC3OC(n2ccc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.5.0CSCC1C(C(C(O1)n2ccc3c2ncnc3N)O)O
FormulaC12 H16 N4 O3 S
Name2-(4-AMINO-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-METHYLSULFANYLMETHYL-TETRAHYDRO-FURAN-3,4-DIOL;
5'-DEOXY-5'-(METHYLTHIO)-TUBERCIDIN
ChEMBLCHEMBL551561
DrugBankDB02933
ZINCZINC000005141416
PDB chain5tc7 Chain A Residue 304 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5tc7 TBA
Resolution1.75 Å
Binding residue
(original residue number in PDB)
A94 C95 G96 F177 I194 N195 M196 D220 V236
Binding residue
(residue number reindexed from 1)
A86 C87 G88 F169 I186 N187 M188 D212 V228
Annotation score3
Enzymatic activity
Catalytic site (original residue number in PDB) T18 P41 H65 I67 M68 A94 M196 T197 D220 D222 V233
Catalytic site (residue number reindexed from 1) T10 P33 H57 I59 M60 A86 M188 T189 D212 D214 V225
Enzyme Commision number 2.4.2.28: S-methyl-5'-thioadenosine phosphorylase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004645 1,4-alpha-oligoglucan phosphorylase activity
GO:0005515 protein binding
GO:0016757 glycosyltransferase activity
GO:0016763 pentosyltransferase activity
GO:0017061 S-methyl-5-thioadenosine phosphorylase activity
Biological Process
GO:0006139 nucleobase-containing compound metabolic process
GO:0006166 purine ribonucleoside salvage
GO:0006738 nicotinamide riboside catabolic process
GO:0009116 nucleoside metabolic process
GO:0019509 L-methionine salvage from methylthioadenosine
GO:0032259 methylation
GO:0033574 response to testosterone
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0070062 extracellular exosome

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:5tc7, PDBe:5tc7, PDBj:5tc7
PDBsum5tc7
PubMed
UniProtQ13126|MTAP_HUMAN S-methyl-5'-thioadenosine phosphorylase (Gene Name=MTAP)

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