Structure of PDB 5ta9 Chain A Binding Site BS01

Receptor Information
>5ta9 Chain A (length=369) Species: 820 (Bacteroides uniformis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YDQRKADSLGIPKGNKLSAAMKRAMEWPQRDNSWFFEYKMMPLKGDLAYE
EGIVRRDPSAMIKVGDKYYVWYSKSYGETQGFAGDVENEKVFPWDRCDIW
YATSKDGITWKEEGVAVKRGEKGAYDDRSVFTPEVMQWNGKYYLCYQTVK
SPYTVRVKENVAMAWADSPDGPWEKTDKPVLTPSDNGVWEGEEDNRFKVK
AKGDFDSHKVHDPCIIPYNGKFYLYYKGERMGEEITWGGREIKHGVAIAD
NPLGPYTKSEYNPISNSGHEICVWPYKGGIASLITTDGPEKNTLQWSPDG
INFEIMSVIPGAPHAIGLNRSADNDKEPTEILRWGLTHQYITYNYQCIMR
FETWTKQTHTAIGESTKRK
Ligand information
Ligand IDGAL
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3+,4+,5-,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-FPRJBGLDSA-N
SMILES
SoftwareSMILES
CACTVS 3.370OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O
OpenEye OEToolkits 1.7.2C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.370OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
ACDLabs 12.01OC1C(O)C(OC(O)C1O)CO
OpenEye OEToolkits 1.7.2C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
FormulaC6 H12 O6
Namebeta-D-galactopyranose;
beta-D-galactose;
D-galactose;
galactose
ChEMBLCHEMBL300520
DrugBank
ZINCZINC000002597049
PDB chain5ta9 Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5ta9 Molecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont.
Resolution2.4 Å
Binding residue
(original residue number in PDB)		E262 R273 H302
Binding residue
(residue number reindexed from 1)		E229 R240 H269
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016798 hydrolase activity, acting on glycosyl bonds
Biological Process
GO:0005975 carbohydrate metabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:5ta9, PDBe:5ta9, PDBj:5ta9
PDBsum5ta9
PubMed29535379
UniProtA0A2D0TCD6

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