Structure of PDB 5qp7 Chain A Binding Site BS01

Receptor Information
>5qp7 Chain A (length=149) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GVPTYGAIILDETLENVLLVQGYLAKSGWGFPKGKVNKEEAPHDCAAREV
FEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNPKTRREIR
NIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLSRRFG
Ligand information
Ligand IDLJJ
InChIInChI=1S/C10H17N3O/c1-8-12-13-10(14-8)11-9-6-4-2-3-5-7-9/h9H,2-7H2,1H3,(H,11,13)
InChIKeyBHDKFMDJCREHTJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6Cc1nnc(o1)NC2CCCCCC2
CACTVS 3.385Cc1oc(NC2CCCCCC2)nn1
ACDLabs 12.01n2nc(NC1CCCCCC1)oc2C
FormulaC10 H17 N3 O
NameN-cycloheptyl-5-methyl-1,3,4-oxadiazol-2-amine
ChEMBL
DrugBank
ZINC
PDB chain5qp7 Chain A Residue 306 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5qp7 PanDDA analysis group deposition
Resolution1.88 Å
Binding residue
(original residue number in PDB)		V115 G117 E148 I194 M227
Binding residue
(residue number reindexed from 1)		V20 G22 E53 I99 M132
Annotation score1
Enzymatic activity
Enzyme Commision number 3.6.1.62: 5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase.
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0140933 5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity
Biological Process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA

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Molecular Function
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Biological Process
External links
PDB RCSB:5qp7, PDBe:5qp7, PDBj:5qp7
PDBsum5qp7
PubMed
UniProtQ8IU60|DCP2_HUMAN m7GpppN-mRNA hydrolase (Gene Name=DCP2)

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