Structure of PDB 5qj1 Chain A Binding Site BS01

Receptor Information
>5qj1 Chain A (length=543) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SMSYSWTGALITPCSPEEEKLPINPLSNSSLRYHNKVYCTTSKSASQRAK
KVTFDRTQVLDAHYDSVLKDIKLAASKVSARLLTLEEACQLTPPHSARSK
YGFGAKEVRSLSGRAVNHIKSVWKDLLEDPQTPIPTTIMAKNEVFCVDGK
KPARLIVYPDLGVRVCEKMALYDITQKLPQAVMGASYGFQYSPAQRVEYL
LKAWAEKKDPMGFSYDTRCFDSTVTERDIRTEESIYQACSLPEEARTAIH
SLTERLYVGGPMFNSKGQTCGYRRCRASGVLTTSMGNTITCYVKALAACK
AAGIVAPTMLVCGDDLVVISESQGTEEDERNLRAFTEAMTRYSAPPGDPP
RPEYDLELITSCSSNVSVALGPRGRRRYYLTRDPTTPLARAAWETVRHSP
INSWLGNIIQYAPTIWVRMVLMTHFFSILMVQDTLDQNLNFEMYGSVYSV
NPLDLPAIIERLHGLDAFSMHTYSHHELTRVASALRKLGAPPLRVWKSRA
RAVRASLISRGGKAAVCGRYLFNWAVKTKLKLTPLPEARLLDL
Ligand information
Ligand IDJ6J
InChIInChI=1S/C33H29F2N5O4/c1-4-37-25-15-27-23(28(31(42)36-2)29(44-27)18-5-8-20(34)9-6-18)14-22(25)19-7-10-26(43-3)24(13-19)30(41)40-33(11-12-33)32-38-16-21(35)17-39-32/h5-10,13-17,37H,4,11-12H2,1-3H3,(H,36,42)(H,40,41)
InChIKeyBVKBIOLUEGUBHD-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCNc1cc2oc(c3ccc(F)cc3)c(C(=O)NC)c2cc1c4ccc(OC)c(c4)C(=O)NC5(CC5)c6ncc(F)cn6
OpenEye OEToolkits 2.0.6CCNc1cc2c(cc1c3ccc(c(c3)C(=O)NC4(CC4)c5ncc(cn5)F)OC)c(c(o2)c6ccc(cc6)F)C(=O)NC
ACDLabs 12.01c1(ccc(F)cc1)c2oc6c(c2C(NC)=O)cc(c5ccc(c(C(=O)NC4(c3ncc(cn3)F)CC4)c5)OC)c(c6)NCC
FormulaC33 H29 F2 N5 O4
Name6-(ethylamino)-2-(4-fluorophenyl)-5-(3-{[1-(5-fluoropyrimidin-2-yl)cyclopropyl]carbamoyl}-4-methoxyphenyl)-N-methyl-1-benzofuran-3-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain5qj1 Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5qj1 Structure-Property Basis for Solving Transporter-Mediated Efflux and Pan-Genotypic Inhibition in HCV NS5B Inhibitors.
Resolution2.17 Å
Binding residue
(original residue number in PDB)
F193 Y195 R200 L204 L314 I363 S365 C366 S368 Q414 Y415 Y448 L466
Binding residue
(residue number reindexed from 1)
F189 Y191 R196 L200 L310 I359 S361 C362 S364 Q410 Y411 Y444 L462
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.48: RNA-directed RNA polymerase.
3.4.21.98: hepacivirin.
3.4.22.-
3.6.1.15: nucleoside-triphosphate phosphatase.
3.6.4.13: RNA helicase.
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003968 RNA-dependent RNA polymerase activity
Biological Process
GO:0039694 viral RNA genome replication

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Molecular Function

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Biological Process
External links
PDB RCSB:5qj1, PDBe:5qj1, PDBj:5qj1
PDBsum5qj1
PubMed30613329
UniProtQ99IB8|POLG_HCVJF Genome polyprotein

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