Structure of PDB 5oo9 Chain A Binding Site BS01

Receptor Information
>5oo9 Chain A (length=121) Species: 116188 (Streptomyces coeruleorubidus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MTKYKYTVEESERFNKHGIDLTVYGQVDPSATVVRVSVERGHFQEFFNVR
SSYTFYVVSGQGVFYLNSEAVPAGATDLITVPPNTRIHYFGSMEMVLTVA
PAFNEQDERHVRFISESESPY
Ligand information
Ligand IDURI
InChIInChI=1S/C9H12N2O6/c12-3-4-6(14)7(15)8(17-4)11-2-1-5(13)10-9(11)16/h1-2,4,6-8,12,14-15H,3H2,(H,10,13,16)/t4-,6-,7-,8-/m1/s1
InChIKeyDRTQHJPVMGBUCF-XVFCMESISA-N
SMILES
SoftwareSMILES
CACTVS 3.341OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=O)NC2=O
OpenEye OEToolkits 1.5.0C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O
ACDLabs 10.04O=C1NC(=O)N(C=C1)C2OC(C(O)C2O)CO
OpenEye OEToolkits 1.5.0C1=CN(C(=O)NC1=O)C2C(C(C(O2)CO)O)O
CACTVS 3.341OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=O)NC2=O
FormulaC9 H12 N2 O6
NameURIDINE
ChEMBLCHEMBL100259
DrugBankDB02745
ZINCZINC000002583633
PDB chain5oo9 Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5oo9 Pac13 is a Small, Monomeric Dehydratase that Mediates the Formation of the 3'-Deoxy Nucleoside of Pacidamycins.
Resolution1.59 Å
Binding residue
(original residue number in PDB)		K16 I19 L21 H42 F46 Y53 Y89 F103 E108
Binding residue
(residue number reindexed from 1)		K16 I19 L21 H42 F46 Y53 Y89 F103 E108
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016853 isomerase activity

View graph for
Molecular Function
External links
PDB RCSB:5oo9, PDBe:5oo9, PDBj:5oo9
PDBsum5oo9
PubMed28786545
UniProtE2EKP5

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