Structure of PDB 5onz Chain A Binding Site BS01

Receptor Information
>5onz Chain A (length=445) Species: 1122247 (Mycolicibacterium hassiacum DSM 44199) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PHDPSFTPTQLAARAAYLLRGNDLGTMTTAAPLLYPHMWSWDAAFVAIGL
APLSVERAVVELDTLLSAQWRNGMIPHIVFANGVDGYFPGPARWATATLA
DNAPRNRLTSGITQPPVHAIAVQRILEHARTRGRSTRAVAEAFLDRRWGD
LMRWHRWLAECRDRNERGRITLYHGWESGMANSPRWDSAYANVVPGKLPE
YQRADNVIITDPSQRPSDGEYDRYLWLLEEMKAVRYDDERLPSVMSFQVE
DVFFSAIFSVACQVLAEIGEDYKRPHADVKDLYLWAERFRAGVVETTDQR
TGAARDFDVLAEKWLVTETAAQFAPLLCGGLPHDRERALLKLLEGPRFCG
HPDLKYGLIPSTSPVSRDFRPREYWRGPVWPVLTWLFSWCFARRGWAERA
RLLRQEGLRQASDGSFAEYYEPFTGEPLGSMQQSWTAAAVLDWLG
Ligand information
Ligand ID9YW
InChIInChI=1S/C8H14O8/c9-1-3-5(12)6(13)7(14)8(16-3)15-2-4(10)11/h3,5-9,12-14H,1-2H2,(H,10,11)/t3-,5-,6+,7-,8+/m1/s1
InChIKeyCEXKKLVRUODYGY-VDUCJHRSSA-N
SMILES
SoftwareSMILES
CACTVS 3.385OC[CH]1O[CH](OCC(O)=O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 2.0.6C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OCC(=O)O)O)O)O)O
OpenEye OEToolkits 2.0.6C(C1C(C(C(C(O1)OCC(=O)O)O)O)O)O
CACTVS 3.385OC[C@H]1O[C@H](OCC(O)=O)[C@H](O)[C@@H](O)[C@@H]1O
FormulaC8 H14 O8
Name(alpha-D-glucopyranosyloxy)acetic acid;
Glucosylglycolate;
(alpha-D-glucosyloxy)acetic acid;
(D-glucosyloxy)acetic acid;
(glucosyloxy)acetic acid
ChEMBL
DrugBank
ZINC
PDB chain5onz Chain A Residue 509 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5onz The structural characterization of a glucosylglycerate hydrolase provides insights into the molecular mechanism of mycobacterial recovery from nitrogen starvation.
Resolution1.93 Å
Binding residue
(original residue number in PDB)
Y36 W40 W42 D43 H78 Y88 Q115 G180 Y375 W436
Binding residue
(residue number reindexed from 1)
Y35 W39 W41 D42 H77 Y87 Q114 G179 Y374 W435
Annotation score2
Enzymatic activity
Enzyme Commision number 3.2.1.208: glucosylglycerate hydrolase.
Gene Ontology
Molecular Function
GO:0004573 Glc3Man9GlcNAc2 oligosaccharide glucosidase activity
GO:0016787 hydrolase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0102547 glucosylglycerate hydrolase activity
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0006487 protein N-linked glycosylation
GO:0009311 oligosaccharide metabolic process

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:5onz, PDBe:5onz, PDBj:5onz
PDBsum5onz
PubMed31316802
UniProtK5BDL0|GGH_MYCHD Glucosylglycerate hydrolase (Gene Name=ggh)

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