Structure of PDB 5od6 Chain A Binding Site BS01
Receptor Information
>5od6 Chain A (length=125) Species:
9606
(Homo sapiens) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
MIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQN
VNTKCITIPRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELRAMELC
EFAFNMKKDEVCVNPYHYQRVETPV
Ligand information
>5od6 Chain D (length=16) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
tgcaggcgcgcctgca
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
5od6
Structural basis for genome wide recognition of 5-bp GC motifs by SMAD transcription factors.
Resolution
2.0 Å
Binding residue
(original residue number in PDB)
L71 Q76 V77 S78 K81
Binding residue
(residue number reindexed from 1)
L62 Q67 V68 S69 K72
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Biological Process
GO:0006355
regulation of DNA-templated transcription
Cellular Component
GO:0005667
transcription regulator complex
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:5od6
,
PDBe:5od6
,
PDBj:5od6
PDBsum
5od6
PubMed
29234012
UniProt
P84022
|SMAD3_HUMAN Mothers against decapentaplegic homolog 3 (Gene Name=SMAD3)
[
Back to BioLiP
]