Structure of PDB 5o9x Chain A Binding Site BS01

Receptor Information

>5o9x Chain A (length=541) Species: 293939 (Aspergillus lentulus)

ASPAVRKAISDAALQYAKPEGKIFQYGTAGFRMKADLLNTVVYAVGLLAT
LRSKKLSGQWIGVMVTAAHNPAEDNGVKLVDPMGEMLEAEWEAYATKLAN
APLENIGDVYDELVKEIDVSMENPARVVFARDTRASGSRLIGVLSAALTA
TEAEFIDMKFMTTPQLHYVVRCKNTLGTQYEYGEPTEQGYYEKLAAAFKR
VMRGVKVKGSLTVDCANGVGGPKLRELIKYLPEDTGLDIKIVNDDVINPD
SLNFECGADYVKTKQRAPPSSKASILDRCASLDGDADRILYYFLDEGNVF
RLLDGDRIATLAASFIGDLARSAGIAQKLKIGVVQTAYANGSSTEYIEKV
LKLPSVCTNTGVKHLHHAAMRFDVGVYFEANGHGTITFSENALKTIKNTE
PQSPAQQRSLECLQALTDLINQAVGDAISDMLLVEAILAHKGWTPKEWLA
TYTDLPSRLVRVEVAERSIFKAYDAERKLESPPGLQAKIDSLQSRYNKGR
SFARASGTEDAVRVYAEAASRSEADDLATRVANAVRDAGTV

Ligand information

• Ligand ID: G16
• InChI: InChI=1S/C6H14O12P2/c7-3-2(1-16-19(10,11)12)17-6(5(9)4(3)8)18-20(13,14)15/h2-9H,1H2,(H2,10,11,12)(H2,13,14,15)/p-1/t2-,3-,4+,5-,6-/m1/s1
• InChIKey: RWHOZGRAXYWRNX-VFUOTHLCSA-M
• SMILES:
  CACTVS 3.341: O[C@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H](O[P](O)([O-])=O)[C@@H]1O
  ACDLabs 10.04: O=P([O-])(OC1OC(C(O)C(O)C1O)COP(=O)(O)O)O
  CACTVS 3.341: O[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH](O[P](O)([O-])=O)[CH]1O
  OpenEye OEToolkits 1.5.0: C(C1C(C(C(C(O1)OP(=O)(O)[O-])O)O)O)OP(=O)(O)O
  OpenEye OEToolkits 1.5.0: C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O[P@](=O)(O)[O-])O)O)O)OP(=O)(O)O
• Formula: C6 H13 O12 P2
• Name: 1,6-di-O-phosphono-alpha-D-glucopyranose;
  ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE;
  1,6-di-O-phosphono-alpha-D-glucose;
  1,6-di-O-phosphono-D-glucose;
  1,6-di-O-phosphono-glucose
• PDB chain: 5o9x Chain A Residue 601

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5o9x Evidence for substrate-assisted catalysis inN-acetylphosphoglucosamine mutase.
• Resolution: 1.9 Å
• Binding residue (original residue number in PDB): T29 R33 A69 H70 R289 T361 G362 V363 E380 H384 R505 S507 G508 T509 R514
• Binding residue (residue number reindexed from 1): T28 R32 A68 H69 R288 T360 G361 V362 E379 H383 R504 S506 G507 T508 R513
• Annotation score: 2

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 05:53:32 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5o9x', asym_id = 'A', bs = 'BS01', title = 'Evidence for substrate-assisted catalysis inN-acetylphosphoglucosamine mutase.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5o9x', asym_id='A', bs='BS01', title='Evidence for substrate-assisted catalysis inN-acetylphosphoglucosamine mutase.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0004610,0005975,0016868', uniprot = '', pdbid = '5o9x', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004610,0005975,0016868', uniprot='', pdbid='5o9x', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>