Structure of PDB 5o9p Chain A Binding Site BS01

Receptor Information
>5o9p Chain A (length=435) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SFEKTPAIKIVGNKFFDSESGEQFFIKGIAYQLQRSGAFETSYIDALADP
KICLRDIPFLKMLGVNTLRVYAIDPTKSHDICMEALSAEGMYVLLDLSEP
DISINRENPSWDVHIFERYKSVIDAMSSFPNLLGYFAGNEVTNDHTNTFA
SPFVKAAIRDAKEYISHSNHRKIPVGYSTNDDAMTRDNLARYFVCGDVKA
DFYGINMYEWCGYSTYGTSGYRERTKEFEGYPIPVFFSEFGCNLVRPRPF
TEVSALYGNKMSSVWSGGLAYMYFEEENEYGVVKINDNDGVDILPDFKNL
KKEFAKADPKGITEEEYLTESVECPHIAVGVWEANEKLPETPDRSKCACL
DEILPCEIVPGKYEEYFSYLCSKVDCSDILANGKTGEYGEFSDCSVEQKL
SLQLSKLYCKIGANDRHCPLNDKNVYFNLESLQPC
Ligand information
Ligand ID9P8
InChIInChI=1S/C27H40N4O16/c32-6-13-16(35)19(38)20(39)26(44-13)47-24-18(37)15(8-34)45-27(22(24)41)46-23-17(36)14(7-33)43-25(21(23)40)31-5-12(29-30-31)10-42-9-11-3-1-2-4-28-11/h1-5,13-27,32-41H,6-10H2/t13-,14-,15-,16-,17-,18-,19+,20-,21-,22-,23+,24+,25-,26+,27+/m1/s1
InChIKeyGZCRLDXRIWVPBY-FLQYNTDFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6c1ccnc(c1)COCc2cn(nn2)C3C(C(C(C(O3)CO)O)OC4C(C(C(C(O4)CO)O)OC5C(C(C(C(O5)CO)O)O)O)O)O
CACTVS 3.385OC[C@H]1O[C@@H](O[C@H]2[C@H](O)[C@@H](CO)O[C@@H](O[C@H]3[C@H](O)[C@@H](CO)O[C@H]([C@@H]3O)n4cc(COCc5ccccn5)nn4)[C@@H]2O)[C@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 2.0.6c1ccnc(c1)COCc2cn(nn2)[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O)O)O
CACTVS 3.385OC[CH]1O[CH](O[CH]2[CH](O)[CH](CO)O[CH](O[CH]3[CH](O)[CH](CO)O[CH]([CH]3O)n4cc(COCc5ccccn5)nn4)[CH]2O)[CH](O)[CH](O)[CH]1O
FormulaC27 H40 N4 O16
Name(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-3,5-bis(oxidanyl)-6-[4-(pyridin-2-ylmethoxymethyl)-1,2,3-triazol-1-yl]oxan-4-yl]oxy-3,5-bis(oxidanyl)oxan-4-yl]oxy-oxane-3,4,5-triol
ChEMBL
DrugBank
ZINC
PDB chain5o9p Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5o9p Inhibitors against Fungal Cell Wall Remodeling Enzymes.
Resolution1.75 Å
Binding residue
(original residue number in PDB)
Y107 D132 S134 P136 S139 I140 R142 V177 Y244 E275 Y307 Y316
Binding residue
(residue number reindexed from 1)
Y71 D96 S98 P100 S103 I104 R106 V141 Y208 E239 Y271 Y280
Annotation score1
Binding affinityMOAD: Kd=8.06uM
PDBbind-CN: -logKd/Ki=5.09,Kd=8.06uM
Enzymatic activity
Enzyme Commision number 2.4.1.-
External links
PDB RCSB:5o9p, PDBe:5o9p, PDBj:5o9p
PDBsum5o9p
PubMed29164827
UniProtQ06135|GAS2_YEAST 1,3-beta-glucanosyltransferase GAS2 (Gene Name=GAS2)

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