Structure of PDB 5o8l Chain A Binding Site BS01

Receptor Information
>5o8l Chain A (length=1098) Species: 33964 (Leuconostoc citreum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKGFDEQGNQIKIATDLSGNVYYFDASGKMLTGVQNIDGKKYYFDEQGHR
RRNYAGVFNNEFIYFGLDGVGQSAIEYQFEKGLTSQNSVATSHNAAKSYD
TKSFTNVDGFLTANSWYRPTDILRNGTKWEPSTETDFRPLLMTWWPDKEV
QANYLNYMSALGLGDQKIYTGASSQLDLNNAALIVQEAIEKKISLEKSTK
WLDDSIKSFIKSKRKDIQGNLVDTNPGWTIDSETGSTNHLQNGAFIFTNS
PLVPEANAAEGNRLINRTPSQQTGNHISYASQPYSGDDWGYELLLGNDVD
NSNPIVQAEQLNWIHYLMNFGTITAPQDPDAHLANFDSIRIDAVDNVDAD
LLQIAGDYFKAAYQVGENDKNANQHIHILQDWSPNDVWYNQQVNGNSQLT
MDATMQNQLLASLTRPITSRDSMKSFTKDALLVHRTADNSYNQAVPNYSF
IRAHDSEVQTIIAKIISDKHPDLYPTVDKALLAKDSALYDEAFTEYNADM
QKISSQKQYTHNNMPSAYAILLTNKDTVPRVYYGDLFTDNGEYMANKTPY
YDAITSLLTARTKFVSGGQSLSVDKNDVLTSVRYGKGALSATDNGSSDTR
NQGIGVIVSNNPNLDLNNDKVTLSMGISHAHQAYRPLLLTNSQGIVAYAT
DSEVPQNLYKTTNDKGELTFDASEIKGYDTVQTSGYLAVWVPVGASDEQD
ARTIASTEKNNGNSVYHSNAALDSQLIYEGFSNFQTVPSKNASADEYANV
IIAKHAADFNKWGVTSFQMAPQYRSSTDGSFLDAVDTVQNGYAFTDRYDL
GFNAADGSKNPTKYGTDEDLRNAIKSLHAQKTYDGSSIQVMADFVPDQLY
NMPLEQAVSVIRTDKYGVNSENPDIQNIIYAANIKSSGTDYQSIYGGKYL
AELQKNPLFKSLFDRIQISTKKTIDPNTRITQWSAKYFNGSNIQGKGINY
VLKDWASNKYFNVSSNDDMYSRLPKQLMNQESNTGFIVDDIGVKYYSISG
YQAKNTFVEDGNGEWYYFDNDGYMVKSTEESGPLRTVNASSKKYYILPNG
VEIRNSFGQDIQGNTYYFDARGEMVTSQYISDDTQNIYYFNNDGTMAK
Ligand information
Ligand IDGLC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-DVKNGEFBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-glucopyranose;
alpha-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL423707
DrugBank
ZINCZINC000003861213
PDB chain5o8l Chain B Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5o8l Investigations on the Determinants Responsible for Low Molar Mass Dextran Formation by DSR-M Dextransucrase
Resolution3.6 Å
Binding residue
(original residue number in PDB)		D677 H789 D790 D1118 Y1127 Q1183
Binding residue
(residue number reindexed from 1)		D342 H454 D455 D783 Y792 Q848
Annotation score1
Enzymatic activity
Enzyme Commision number 2.4.1.5: dextransucrase.
Gene Ontology
Molecular Function
GO:0016757 glycosyltransferase activity
GO:0046527 glucosyltransferase activity
GO:0046872 metal ion binding
GO:0047849 dextransucrase activity
Biological Process
GO:0009250 glucan biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5o8l, PDBe:5o8l, PDBj:5o8l
PDBsum5o8l
PubMed
UniProtA0A2H4A2Q1

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