Structure of PDB 5o1j Chain A Binding Site BS01

Receptor Information
>5o1j Chain A (length=580) Species: 122586 (Neisseria meningitidis MC58) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AETADLSASVPTRPAEPERKTLADYGGYPSALDAVKQKNDAAVAAYLENA
GDSAMAENVRNEWLKSLGARRQWTLFAQEYAKLEPAGRAQEVECYADSSR
NDYTRAAELVKNTGKLPSGCTKLLEQAAASGLLDGNDAWRRVRGLLAGRQ
TTDARNLAAALGSPFDGGTQGSREYALLNVIGKEARKSPNAAALLSEMES
GLSLEQRSFAWGVLGHYQSQNLNVPAALDYYGKVADRRQLTDDQIEWYAR
AALRARRWDELASVISHMPEKLQKSPTWLYWLARSRAATGNNQEAEKLYK
QAAATGRNFYAVLAGEELGRKIDTRNNVPDAGKNSVRRMAEDGAVKRALV
LFQNSQSAGDAKMRRQAQAEWRFATRGFDEDKLLTAAQTAFDHGFYDMAV
NSAERTDRKLNYTLRYISPFKDTVIRHAQNVNVDPAWVYGLIRQESRFVI
GAQSRVGAQGLMQVMPATAREIAGKIGMDAAQLYTADGNIRMGTWYMADT
KRRLQNNEVLATAGYNAGPGRARRWQADTPLEGAVYAETIPFSETRDYVK
KVMANAAYYAALFGAPHIPLKQRMGIVPAR
Ligand information
Ligand IDZ4S
InChIInChI=1S/C8H13NO5/c1-3(10)9-5-7(12)6(11)4-2-13-8(5)14-4/h4-8,11-12H,2H2,1H3,(H,9,10)/t4-,5-,6-,7-,8-/m1/s1
InChIKeyPJFUEEUSPVNDFW-FMDGEEDCSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C(NC2C(O)C(O)C1OC2OC1)C
CACTVS 3.370CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@H]2CO[C@@H]1O2
OpenEye OEToolkits 1.7.6CC(=O)NC1C(C(C2COC1O2)O)O
OpenEye OEToolkits 1.7.6CC(=O)N[C@@H]1[C@H]([C@@H]([C@H]2CO[C@@H]1O2)O)O
CACTVS 3.370CC(=O)N[CH]1[CH](O)[CH](O)[CH]2CO[CH]1O2
FormulaC8 H13 N O5
Name1,6-anhydro-N-acetyl-beta-D-glucopyranosamine;
N-[(1R,2S,3R,4R,5R)-2,3-bis(oxidanyl)-6,8-dioxabicyclo[3.2.1]octan-4-yl]ethanamide;
1,6-anhydro-N-acetyl-beta-D-glucosamine;
1,6-anhydro-N-acetyl-D-glucosamine;
1,6-anhydro-N-acetyl-glucosamine
ChEMBL
DrugBank
ZINC
PDB chain5o1j Chain B Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5o1j A step-by-stepin crystalloguide to bond cleavage and 1,6-anhydro-sugar product synthesis by a peptidoglycan-degrading lytic transglycosylase.
Resolution1.9 Å
Binding residue
(original residue number in PDB)
E481 S490 V492 Q499 N552
Binding residue
(residue number reindexed from 1)
E445 S454 V456 Q463 N516
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0046872 metal ion binding
Cellular Component
GO:0042597 periplasmic space

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Molecular Function

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Cellular Component
External links
PDB RCSB:5o1j, PDBe:5o1j, PDBj:5o1j
PDBsum5o1j
PubMed29483188
UniProtQ9JXP1

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