Structure of PDB 5nx7 Chain A Binding Site BS01

Receptor Information
>5nx7 Chain A (length=308) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GHEEFDIPFPSRVNPFHARAEDRHVAWMRAMGLITGDAAEATYRRWSPAK
VGARWFYLAQGEDLDLGCDIFGWFFAYDDHFDGTAAFVNRTVAMLDPRAD
PTGEHPLNIAFHDLWQRESAPMSPLWQRRAVDHWTQYLTAHITEATNRTR
SPTIADYLELRHRTGFMPPLLDLIERVWRAEIPAPVYTTPEVQTLLHTTN
QNINIVNDVLSLEKEEAHGDPHNLVLVIQHERQSTRQQALATARRMIDEW
TDTFIRTEPRLPALCGRLGIPLADRTSLYTAVEGMRAAIRGNYDWCAETN
RYVHRTPW
Ligand information
Ligand ID0FV
InChIInChI=1S/C10H19FO7P2/c1-8(2)5-4-6-9(3)10(11)7-17-20(15,16)18-19(12,13)14/h5H,4,6-7H2,1-3H3,(H,15,16)(H2,12,13,14)/b10-9-
InChIKeyBYJNSLXDWGDGAC-KTKRTIGZSA-N
SMILES
SoftwareSMILES
CACTVS 3.370CC(C)=CCCC(C)=C(F)CO[P](O)(=O)O[P](O)(O)=O
ACDLabs 12.01O=P(O)(O)OP(=O)(OCC(\F)=C(/C)CC\C=C(/C)C)O
OpenEye OEToolkits 1.7.6CC(=CCC/C(=C(/COP(=O)(O)OP(=O)(O)O)\F)/C)C
CACTVS 3.370CC(C)=CCCC(/C)=C(F)/CO[P](O)(=O)O[P](O)(O)=O
OpenEye OEToolkits 1.7.6CC(=CCCC(=C(COP(=O)(O)OP(=O)(O)O)F)C)C
FormulaC10 H19 F O7 P2
Name(2Z)-2-fluoro-3,7-dimethylocta-2,6-dien-1-yl trihydrogen diphosphate;
2-fluorogeranyl diphosphate
ChEMBL
DrugBank
ZINC
PDB chain5nx7 Chain A Residue 400 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5nx7 Structural Basis of Catalysis in the Bacterial Monoterpene Synthases Linalool Synthase and 1,8-Cineole Synthase.
Resolution1.51 Å
Binding residue
(original residue number in PDB)
F77 R174 L183 I216 N220 S224 K227 E228 W308 R314 Y315
Binding residue
(residue number reindexed from 1)
F74 R161 L170 I203 N207 S211 K214 E215 W295 R301 Y302
Annotation score3
Enzymatic activity
Catalytic site (original residue number in PDB) F77 F78 D81 D85 R159 R174 G178 N220 S224 K227 E228 H231 W308 C309 R314
Catalytic site (residue number reindexed from 1) F74 F75 D78 D82 R148 R161 G165 N207 S211 K214 E215 H218 W295 C296 R301
Enzyme Commision number 4.2.3.108: 1,8-cineole synthase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0016829 lyase activity
GO:0046872 metal ion binding
GO:0102313 1,8-cineole synthase activity
Biological Process
GO:0033383 geranyl diphosphate metabolic process

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:5nx7, PDBe:5nx7, PDBj:5nx7
PDBsum5nx7
PubMed28966840
UniProtB5GMG2|CNSA_STRCL 1,8-cineole synthase (Gene Name=cnsA)

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