Structure of PDB 5nm8 Chain A Binding Site BS01

Receptor Information
>5nm8 Chain A (length=217) Species: 1140 (Synechococcus elongatus PCC 7942 = FACHB-805) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QIAERLASLRSQLPPSVQLIAVSKNHPAAAIREAYAAGQRHFGENRVQEA
IAKQAELTDLPDLTWHLLGKLQSNKARKAVEHFDWIHSVDSWALAERLDR
IAGELGRSPKLCLQVKLLPDPNKAGWDPADLRAELPQLSQLQQVQIRGLM
VIAPLGLTAAETQALFAQARTFAAELQQQAPQLRLTELSMGMSSDWPLAV
AEGATWIRVGTQLFGPR
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain5nm8 Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5nm8 Studies on cyanobacterial protein PipY shed light on structure, potential functions, and vitamin B6 -dependent epilepsy.
Resolution1.93 Å
Binding residue
(original residue number in PDB)		V24 K26 N47 L70 M194 S195 R210 G212 T213
Binding residue
(residue number reindexed from 1)		V22 K24 N45 L68 M192 S193 R208 G210 T211
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0030170 pyridoxal phosphate binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5nm8, PDBe:5nm8, PDBj:5nm8
PDBsum5nm8
PubMed28914444
UniProtQ31LH9

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