Structure of PDB 5nf2 Chain A Binding Site BS01

Receptor Information
>5nf2 Chain A (length=485) Species: 431947 (Porphyromonas gingivalis ATCC 33277) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PGEWAGKDKIEKVSIYMVPQGGPGLVESAEDLDFGTYYENPTIDPATHNA
ILKPKKGIKVNSAVGKTVKVYVVLNDIAGKAKALLANVNAADFDAKFKEI
IELSTQAQALGTVADGPNPATAAGKIAKKNGTTDETIMMTCLQPSDALTI
EAKVTVERSVARAMVSTKAQSYEIKATTQIGEIAAGSVLATITDIRWVVA
QGERRQYLSKKRGTVPENTWVTPGSGFVPTSSTFHTNATEYYDYAGLWED
HNTNEAVISGTQVPTLADYQLQDVTGELANALSGKFLLPNTHKSGANAAS
SDYKRGNTAYVLVRAKFTPKKEAFIDRGKTYSDNTAVPEYVAGEDFFVGE
NGQFYVSMKSVTDPKVGGVAGMKAHKYVKGKVLYYAWLNPSTTSPDSWWN
SPVVRNNIYHIHIKSIKKLGFNWNPLVPDPDPSNPENPNNPDPNPDEPGT
PVPTDPENPLPDQDTFMSVEVTVLPWKVHSYEVDL
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5nf2 Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5nf2 Structural and functional characterization of shaft, anchor, and tip proteins of the Mfa1 fimbria from the periodontal pathogen Porphyromonas gingivalis.
Resolution1.73 Å
Binding residue
(original residue number in PDB)		D507 D509 N512 E514
Binding residue
(residue number reindexed from 1)		D429 D431 N434 E436
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:5nf2, PDBe:5nf2, PDBj:5nf2
PDBsum5nf2
PubMed29379120
UniProtB2RHG1|MFA1_PORG3 Minor fimbrium subunit Mfa1 (Gene Name=mfa1)

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