Structure of PDB 5mh6 Chain A Binding Site BS01

Receptor Information

>5mh6 Chain A (length=306) Species: 523841 (Haloferax mediterranei ATCC 33500)

IERLAVDESVGRAMPPQRFIEALSDLGVPVEFAGEDEQFGPGDAVASFGH
RDAFLDADWVHCIRAGYDEFPVGVYEEAGTYLTNSTGIHGTTVGETVAGY
MLTFARRLHAYRDAQHDHAWDLPRYEEPFTLAGERVCVVGLGTLGRGVVD
RAAALGMEVVGVRRSGDPVDNVSTVYTPDRLHEAIADARFVVLATPLTDE
TEGMVAAPEFETMREDASLVNVARGPVVVESDLVAALDSGDIAGAALDVF
SEEPLPEDSPLWDFEDVLITPHVSAATSKYHEDVAALIRENIEKIATGDE
LTNRVV

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 5mh6 Chain A Residue 411

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5mh6 Productive ternary complexes of D-2-hydroxyacid dehydrogenase provide insights into the chiral specificity of its reaction mechanism
• Resolution: 1.35 Å
• Binding residue (original residue number in PDB): T132 A134
• Binding residue (residue number reindexed from 1): T130 A132
• Annotation score: 4

Enzymatic activity

• Enzyme Commision number: 1.1.1.-

Gene Ontology

Molecular Function

• GO:0016491 oxidoreductase activity
• GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
• GO:0031406 carboxylic acid binding
• GO:0051287 NAD binding
• GO:0070402 NADPH binding
• GO:0070404 NADH binding

Biological Process

• GO:0019752 carboxylic acid metabolic process

External links

• PDB: RCSB:5mh6, PDBe:5mh6, PDBj:5mh6
• PDBsum: 5mh6
• UniProt: Q2VEQ7|DDH_HALMT D-2-hydroxyacid dehydrogenase (Gene Name=ddh)