Structure of PDB 5m8e Chain A Binding Site BS01

Receptor Information

>5m8e Chain A (length=323) Species: 137591 (Weissella cibaria) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

TVRYENPVIIQRADPYIYKHTDGYYYFVASVPAYNLIELRRAKTIDGLAH
AMPRTIWRKHDSGTGAQSELIWAPELHYTDGKWYVYYAASHTTAFDENGM
FQHRMFAIECDAEDPMETEENWVEKGQIETHLDSFALDATSFELNDKLYY
VWAQKDPEIKGNSNLYIAEMENPWTLKTAPVMLSKPEFDWETKIFWVNEG
PAILKRNGKVFLTFSGSATDENYAMGMLWIEDDKDVLDAANWHKLDHPVF
QSDMENGLYGPGHNSFTVAEDGETDLLVYHVRNYLDIKGDPLYDPNRHTM
VQPFEWDDEGFPVFGKPQPFTFN

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

5m8e Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5m8e Three-dimensional structures and functional studies of two GH43 arabinofuranosidases from Weissella sp. strain 142 and Lactobacillus brevis.
Resolution	2.0 Å
Binding residue (original residue number in PDB)	E76 H264
Binding residue (residue number reindexed from 1)	E75 H263
Annotation score	4

Enzymatic activity

Enzyme Commision number

3.2.1.55: non-reducing end alpha-L-arabinofuranosidase.

Gene Ontology

	Molecular Function
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016798	hydrolase activity, acting on glycosyl bonds
GO:0046556	alpha-L-arabinofuranosidase activity
GO:0046872	metal ion binding

	Biological Process
GO:0005975	carbohydrate metabolic process

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Molecular Function

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Biological Process

External links

PDB	RCSB:5m8e, PDBe:5m8e, PDBj:5m8e
PDBsum	5m8e
PubMed	28485897
UniProt	A0A0D1M7L2

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