Structure of PDB 5m1p Chain A Binding Site BS01

Receptor Information
>5m1p Chain A (length=187) Species: 1406341 (Thermus phage G20c) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AMNSVFSGLDMLILLPYERRGTRLVVEDYRPDHIYCIGADFGKNQDYSVF
SVLDLDTGAIACLERMNGATWSDQVARLKALSEDYGHAYVVADTWGVGDA
IAEELDAQGINYTPLPVKSSSVKEQLISNLALLMEKGQVAVPNDKTILDE
LRNFRYYRTASGNQVMRAYGRGHDDIVMSLALAYSQY
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5m1p Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5m1p Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism.
Resolution1.1 Å
Binding residue
(original residue number in PDB)		D294 F295 D300 Y301 D429
Binding residue
(residue number reindexed from 1)		D40 F41 D46 Y47 D175
Annotation score4
Enzymatic activity
Enzyme Commision number 3.1.21.-
3.6.4.-
External links
PDB RCSB:5m1p, PDBe:5m1p, PDBj:5m1p
PDBsum5m1p
PubMed28100693
UniProtA0A1L4BKS3|TERL_BPG20 Terminase, large subunit (Gene Name=G20c_80)

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