Structure of PDB 5m11 Chain A Binding Site BS01

Receptor Information
>5m11 Chain A (length=748) Species: 837 (Porphyromonas gingivalis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GIWNTLLAIHKTEKAVETPKKVFAVANGVLYSVGKEAPHEAKIFDRISGL
SDTSVSSIAYSEQLKSLVIYYASGNIDILDEAGRVTNVPALKDNIDLIDK
TLNRLLIVGNRAYLAGGFGLSVLDVAEARIPATYAKGTKVTDVAKLDNDR
LLMLKEGQLFIGKETDNLQDPAAWTALSLNLPMGSVTGLGIVGEDICFLL
ADGRVYVAANQSFEPELLLSSSADSRLYVTDRGLFICAENRIYFIEKGRK
TTQFPIADVLGVGAMNESNTAYIALGEEGLASLLLAEGSTAEAMPVAFDG
PGDNDFYEMRFSHGRLYAASGLWGTNLMGHAGMVKLYDGNRWTNFDKKTV
QEQLGGGFSFNDAIDIAVSNGDPDHFFVGTWGNGLFEFKDGKAIARYSGN
ETAIAECNPGDARVKAIAFDNKGNLWGTLGAVGKNIFMYDPQSSTWHSFS
YPDVANLASFGNMIILPNGDKWVNILHRSGGSTRKGVLIFNDRGTPETTS
DDSHLYVEQFVNRLGAAIGHKTIYAMAVDHNGSVWMGSDIGIFGVYNAAG
VLSSTSTPIAVRPVGGEEPNLYYVLDKVTVTDIVVDKLNHKWVATQGTGL
YLLSEDCSKILAQFTVENSPLLSNNILSLALNDDNGLLYIGTADGLMTFQ
TGTGSGSASELDGVYVYPNPLRPEYPDGVTIAGLQAGCSVKITDTTGRLL
YQTESVTTEVKWNARGADGNRVASGVYAVAVYDPVSKKSKLIRFAVIR
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5m11 Chain A Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5m11 Structural and functional probing of PorZ, an essential bacterial surface component of the type-IX secretion system of human oral-microbiomic Porphyromonas gingivalis.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		D520 T523 T526 D529 D530
Binding residue
(residue number reindexed from 1)		D492 T495 T498 D501 D502
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5m11, PDBe:5m11, PDBj:5m11
PDBsum5m11
PubMed27883039
UniProtQ9S3Q8

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