Structure of PDB 5lo8 Chain A Binding Site BS01

Receptor Information
>5lo8 Chain A (length=140) Species: 10116 (Rattus norvegicus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMG
KKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSND
YIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNEN
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5lo8 Chain A Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5lo8 Structural characterization of the Rabphilin-3A-SNAP25 interaction.
Resolution2.5 Å
Binding residue
(original residue number in PDB)
M570 D571 D631 D633 D639
Binding residue
(residue number reindexed from 1)
M31 D32 D92 D94 D100
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:5lo8, PDBe:5lo8, PDBj:5lo8
PDBsum5lo8
PubMed28634303
UniProtP47709|RP3A_RAT Rabphilin-3A (Gene Name=Rph3a)

[Back to BioLiP]