Structure of PDB 5liv Chain A Binding Site BS01

Receptor Information
>5liv Chain A (length=397) Species: 448385 (Sorangium cellulosum So ce56) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SSMDFPLANLFFVPSEDATAFGRRLRAAAQQAPIVFDTAFGMPILLRKSH
ITTAYRDTATFSTRMFQAGILNGGLAAMQGDEHARMRRVYNMFFLPRAVS
QYEERFVRPISEQVVDRLAKPRVDLLEDFAMELPRRVIGELFGFPAEKLH
ETDERVRAMLRGLVRMHDPAAVAESQRAYGETLGLITEVVERESRDTSDT
LLGEILRTLKAEHMDTIEASRQIVLSLILGGYETTSWLVANTIHALLAHP
DTLARVRQDPSLLPAAIEEGMRWCPSSFGVLRMVERDVRLDDQALSAGTV
VCLAGIAGNYDETAYPSPEVYDIDRKPLPAANVFGGGAHFCVGAPLARME
ARVGLQALLARFPGLRAVPEERPSFMYGAKDSVAHGPDKLPVLLHHH
Ligand information
Ligand IDHEM
InChIInChI=1S/C34H34N4O4.Fe/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,1-2,9-12H2,3-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;
InChIKeyKABFMIBPWCXCRK-RGGAHWMASA-L
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)C=C)C(=C(C7=C2)C)C=C)C)CCC(=O)O
CACTVS 3.385CC1=C(CCC(O)=O)C2=Cc3n4[Fe]5|6|N2=C1C=c7n5c(=CC8=N|6C(=Cc4c(C)c3CCC(O)=O)C(=C8C=C)C)c(C)c7C=C
ACDLabs 12.01C=1c3c(c(c4C=C5C(=C(C=6C=C7C(=C(C8=CC=2C(=C(C=1N=2[Fe](n34)(N5=6)N78)CCC(=O)O)C)\C=C)C)\C=C)C)C)CCC(=O)O
FormulaC34 H32 Fe N4 O4
NamePROTOPORPHYRIN IX CONTAINING FE;
HEME
ChEMBL
DrugBankDB18267
ZINC
PDB chain5liv Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5liv Structural characterization of CYP260A1 from Sorangium cellulosum to investigate the 1 alpha-hydroxylation of a mineralocorticoid.
Resolution2.67 Å
Binding residue
(original residue number in PDB)		L123 H131 R135 G279 G280 T283 T284 V329 R331 V382 F383 H388 C390 V391 G392 A396
Binding residue
(residue number reindexed from 1)		L75 H83 R87 G230 G231 T234 T235 V280 R282 V333 F334 H339 C341 V342 G343 A347
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) R210 G279 E282 T283 T284 C390 V391 G392 E399 A433
Catalytic site (residue number reindexed from 1) R161 G230 E233 T234 T235 C341 V342 G343 E350 A384
Enzyme Commision number 1.14.15.19: C-19 steroid 1alpha-hydroxylase.
Gene Ontology
Molecular Function
GO:0004497 monooxygenase activity
GO:0005506 iron ion binding
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 heme binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5liv, PDBe:5liv, PDBj:5liv
PDBsum5liv
PubMed27878817
UniProtA9FDB7|CP260_SORC5 C-19 steroid 1alpha-hydroxylase (Gene Name=sce1588)

[Back to BioLiP]