Structure of PDB 5lal Chain A Binding Site BS01

Receptor Information

>5lal Chain A (length=153) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

DQKKPCKHFSFYFHDILYDGDNVANATSAAIVSPPGLGNFKFGKFVIFDG
PITMDKNYLSKPVARAQGFYFYDMKMDFNSWFSYTLVFNSTEHKGTLNIM
GADLMMEPTRDLSVVGGTGDFFMARGIATFVTDLFQGAKYFRVKMDIKLY
ECY

Ligand information

Ligand ID

GLY

InChI

InChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5)

InChIKey

DHMQDGOQFOQNFH-UHFFFAOYSA-N

SMILES

Software	SMILES
OpenEye OEToolkits 1.5.0	C(C(=O)O)N
CACTVS 3.341	NCC(O)=O
ACDLabs 10.04	O=C(O)CN

Formula

C2 H5 N O2

Name

GLYCINE

PDB chain

5lal Chain A Residue 215 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5lal Dirigent Protein Mode of Action Revealed by the Crystal Structure of AtDIR6.
Resolution	1.4 Å
Binding residue (original residue number in PDB)	D137 F175
Binding residue (residue number reindexed from 1)	D103 F141
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0042349	guiding stereospecific synthesis activity
GO:0042802	identical protein binding
GO:0042803	protein homodimerization activity

	Biological Process
GO:0009699	phenylpropanoid biosynthetic process
GO:0050790	regulation of catalytic activity
GO:1901599	(-)-pinoresinol biosynthetic process

	Cellular Component
GO:0048046	apoplast

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Molecular Function

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Cellular Component

External links

PDB	RCSB:5lal, PDBe:5lal, PDBj:5lal
PDBsum	5lal
PubMed	27756822
UniProt	Q9SUQ8\|DIR6_ARATH Dirigent protein 6 (Gene Name=DIR6)

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