Structure of PDB 5kds Chain A Binding Site BS01

Receptor Information

>5kds Chain A (length=511) Species: 195103 (Clostridium perfringens ATCC 13124) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

HMASVLELEMRGDSISEAKKRKVWNFQDWQITGLSARAGDKITVYVDVAE
GDPTPTLLYKQSLTQHGGATSFQLKPGKNEITIPEINYESNGIPKDVIQG
GDLFFTNYKSDSQKRAPKVRIEGASKYPVFILGKSDENEVMKELEAYVEK
IKAEPKTTPNIFAVSSNKSLEFVQATYALDWYKKNNKTPKYTAEQWDQYI
ADAMGFWGFDNSKDVNSDFNFRIMPMVKNLSGGAFMNAGNGVIGIRPGNQ
DAILAANKGWGVAHELGHNFDTGGRTIVEVTNNMMPLFFESKYKTKTRIT
DQNIWENNTYPKVGLDDYSNNELYNKADSTHLAQLAPLWQLYLYDNTFYG
KFERQFRERDFGNKNREDIYKSWVVAASDAMELDLTEFFARHGIRVDDKV
KEDLAKYPKPDKKIYYLNDLAMNYKGDGFTENAKVSVSTSGSNGNIKLSF
SVDDENKDNILGYEIRRDGKYVGFTSNDSFVDTKSNLDEDGVYVVTPYDR
KLNTLNPIEVN

Ligand information

>5kds Chain G (length=5) Species: 9913 (Bos taurus) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

TAPGG

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5kds Recognition of protein-linked glycans as a determinant of peptidase activity.
Resolution	1.6 Å
Binding residue (original residue number in PDB)	G725 F727 M728 E757
Binding residue (residue number reindexed from 1)	G233 F235 M236 E265

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:5kds, PDBe:5kds, PDBj:5kds
PDBsum	5kds
PubMed	28096352
UniProt	A0A0H2YN38

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