Structure of PDB 5kd4 Chain A Binding Site BS01

Receptor Information
>5kd4 Chain A (length=273) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARW
IEQEGPEYWERETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGC
DVESDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAG
AAERDRAYLEGECVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTL
RCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPL
GKEQKYTCHVEHEGLPEPLTLRW
Ligand information
>5kd4 Chain P (length=10) Species: 11676 (Human immunodeficiency virus 1) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
IGPGRAFYVI
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5kd4 Effects of Cross-Presentation, Antigen Processing, and Peptide Binding in HIV Evasion of T Cell Immunity.
Resolution3.05 Å
Binding residue
(original residue number in PDB)		Y7 Y59 R62 E63 R66 G69 N70 S73 F74 D77 T80 Y84 W97 W114 F116 T143 K146 W147 R155 Y159 W167 Y171
Binding residue
(residue number reindexed from 1)		Y6 Y58 R61 E62 R65 G68 N69 S72 F73 D76 T79 Y83 W96 W113 F115 T142 K145 W146 R154 Y158 W166 Y170
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:5kd4, PDBe:5kd4, PDBj:5kd4
PDBsum5kd4
PubMed29374075
UniProtP01900|HA12_MOUSE H-2 class I histocompatibility antigen, D-D alpha chain (Gene Name=H2-D1)

[Back to BioLiP]