Structure of PDB 5jp6 Chain A Binding Site BS01

Receptor Information
>5jp6 Chain A (length=339) Species: 264462 (Bdellovibrio bacteriovorus HD100) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MSQIGSSVRQAVSDNQSAQTLVEWENSEANPEALFANWRHEFMVDSSKRE
SMKTELCKELQALPAQDLTLFENEIRDENNRALVSGCKEELLAQVDEHFD
EQRESMSVPGHALKAVQSRNSFRFPDNTQKRDMSNGYMAVRGDVARKEVV
LTFDDGPHGLYTDAILRALKEVNAKAMFFATGKSVRTNPEALKRVAADGH
VIGSHSITLTFDEAAAEVRGGHQAVFDVLGWVDPVFRFPYGETSKDLKAF
LKTKSTGEFAWNIESDDWRTQSNEQLLARVLANVESQGRGIVLFHDIQRR
TAEIMPQFLRELYNRGYSVVLLTAADPSAKYNSKLVKRK
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5jp6 Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5jp6 Interrupting peptidoglycan deacetylation during Bdellovibrio predator-prey interaction prevents ultimate destruction of prey wall, liberating bacterial-ghosts.
Resolution1.5 Å
Binding residue
(original residue number in PDB)		D177 H227 Y280
Binding residue
(residue number reindexed from 1)		D155 H205 Y240
Annotation score4
Enzymatic activity
Enzyme Commision number 3.5.1.-
Gene Ontology
Molecular Function
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
Biological Process
GO:0005975 carbohydrate metabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:5jp6, PDBe:5jp6, PDBj:5jp6
PDBsum5jp6
PubMed27211869
UniProtQ6MI90

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