Structure of PDB 5j46 Chain A Binding Site BS01

Receptor Information
>5j46 Chain A (length=169) Species: 395019 (Burkholderia multivorans ATCC 17616) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KTMALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLA
ATQVDVHERVIVIDVSEDKNELRAFINPEIIWSSDGKQVYEEGCLSVPGI
YDEVERPDRVRVRALNEQGETFELDCEGLLAVCIQHEMDHLMGRVFVEYL
SPLKQSRIKTKMKKLERAM
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5j46 Chain A Residue 200 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5j46 Crystal structure of a Peptide Deformylase from Burkholderia multivorans
Resolution1.95 Å
Binding residue
(original residue number in PDB)		C106 H148 H152
Binding residue
(residue number reindexed from 1)		C94 H136 H140
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) G60 Q65 C106 L107 H148 E149 H152
Catalytic site (residue number reindexed from 1) G48 Q53 C94 L95 H136 E137 H140
Enzyme Commision number 3.5.1.88: peptide deformylase.
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0018206 peptidyl-methionine modification

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Molecular Function
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Biological Process
External links
PDB RCSB:5j46, PDBe:5j46, PDBj:5j46
PDBsum5j46
PubMed
UniProtA0A0H3KB98|DEF1_BURM1 Peptide deformylase 1 (Gene Name=def1)

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