Structure of PDB 5izz Chain A Binding Site BS01

Receptor Information
>5izz Chain A (length=318) Species: 77133 (uncultured bacterium) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EVVLKFHSFPPMPANSNAKFVKPWSEKVLAESNGEIKVEIYPAMQLGGKP
PQLVDQVRDGVVDIVWTVAGYTPGRFPHLEAFELPFMPASAEATSQALQE
YVDTVAASDLKDYKVLAVFCHAPGKIHTKEKVIASAADLNGMKMRGPTRV
ITKMLEGLGATPVGMPVPAVAGALSKGVIDGMVVPWEIMPSFKLHELTAA
HTTVSGSRGLYTTPFLFLMNKAKYESLSDEHKKVIDNNAGLALAKLAGQL
WDGFEVPARKLALDAGGTIHSLSGGPLAEMKAAGEGLEADWIKSANDRGL
DGAMLVKTAKDLISKYDK
Ligand information
Ligand ID3HP
InChIInChI=1S/C8H8O3/c9-7-3-1-2-6(4-7)5-8(10)11/h1-4,9H,5H2,(H,10,11)
InChIKeyFVMDYYGIDFPZAX-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C(O)Cc1cc(O)ccc1
CACTVS 3.341OC(=O)Cc1cccc(O)c1
OpenEye OEToolkits 1.5.0c1cc(cc(c1)O)CC(=O)O
FormulaC8 H8 O3
Name3-HYDROXYPHENYLACETATE
ChEMBLCHEMBL190035
DrugBank
ZINCZINC000000395673
PDB chain5izz Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5izz Crystal structure of a marine metagenome TRAP solute binding protein specific for aromatic acid ligands (Sorcerer II Global Ocean Sampling Expedition, unidentified microbe, locus tag GOS_1523157, Triple Surface Mutant K158A_K223A_K313A) in complex with metahydroxyphenylacetate, thermal exchange of ligand
Resolution1.6 Å
Binding residue
(original residue number in PDB)
W90 Y95 R169 P171 V191 E211 I212 F239
Binding residue
(residue number reindexed from 1)
W66 Y71 R145 P147 V167 E187 I188 F215
Annotation score1
Gene Ontology
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UnboundLocalError
Python 3.6.8: /usr/bin/python3
Thu Nov 28 20:11:12 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5izz', asym_id = 'A', bs = 'BS01', title = 'Crystal structure of a marine metagenome TRAP so...hydroxyphenylacetate, thermal exchange of ligand '
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5izz', asym_id='A', bs='BS01', title='Crystal structure of a marine metagenome TRAP so...hydroxyphenylacetate, thermal exchange of ligand ')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0055085', uniprot = '', pdbid = '5izz', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0055085', uniprot='', pdbid='5izz', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>