Structure of PDB 5i7i Chain A Binding Site BS01

Receptor Information
>5i7i Chain A (length=318) Species: 56765 (uncultured marine bacterium) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EVVLKFHSFPPMPANSNAKFVKPWSEKVLAESNGEIKVEIYPAMQLGGKP
PQLVDQVRDGVVDIVWTVAGYTPGRFPHLEAFELPFMPASAEATSQALQE
YVDTVAASDLKDYKVLAVFCHAPGKIHTKEKVIKSAADLNGMKMRGPTRV
ITKMLEGLGATPVGMPVPAVAGALSKGVIDGMVVPWEIMPSFKLHELTKA
HTTVSGSRGLYTTPFLFLMNKAKYESLSDEHKKVIDNNAGLALAKLAGQL
WDGFEVPARKLALDAGGTIHSLSGGPLAEMKAAGEGLEKDWIKSANDRGL
DGAMLVKTAKDLISKYDK
Ligand information
Ligand ID3HB
InChIInChI=1S/C7H6O3/c8-6-3-1-2-5(4-6)7(9)10/h1-4,8H,(H,9,10)
InChIKeyIJFXRHURBJZNAO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C(O)c1cc(O)ccc1
OpenEye OEToolkits 1.7.2c1cc(cc(c1)O)C(=O)O
CACTVS 3.370OC(=O)c1cccc(O)c1
FormulaC7 H6 O3
Name3-HYDROXYBENZOIC ACID
ChEMBLCHEMBL65369
DrugBank
ZINCZINC000000388754
PDB chain5i7i Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5i7i Crystal structure of a marine metagenome TRAP solute binding protein specific for aromatic acid ligands (Sorcerer II Global Ocean Sampling Expedition, unidentified microbe, locus tag GOS_1523157) in complex with co-purified 4-hydroxybenzoate
Resolution1.3 Å
Binding residue
(original residue number in PDB)		Y95 R169 P171 V191 P209 E211 I212 F239
Binding residue
(residue number reindexed from 1)		Y71 R145 P147 V167 P185 E187 I188 F215
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Thu Nov 28 20:06:23 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5i7i', asym_id = 'A', bs = 'BS01', title = 'Crystal structure of a marine metagenome TRAP so...7) in complex with co-purified 4-hydroxybenzoate '
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5i7i', asym_id='A', bs='BS01', title='Crystal structure of a marine metagenome TRAP so...7) in complex with co-purified 4-hydroxybenzoate ')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0055085', uniprot = '', pdbid = '5i7i', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0055085', uniprot='', pdbid='5i7i', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>