Structure of PDB 5h05 Chain A Binding Site BS01

Receptor Information
>5h05 Chain A (length=497) Species: 408172 (marine metagenome) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HMCDSALTAQANDLRIYQVMVESFVNGDDAIGHGTGYGTSHHKGDLQGII
DSLDYIESLGMNAIWLTPIFDSIPVEGQDHWADRLDATGYFTSNYFAVDP
RFGTMEQAKELVEKAHEKGLYVFFDGVFGHHKDNVVPSPEGRLPVGENNP
VSYPESLAFYQEVATFWIEELKIDGWRLDQAYQVPTEAWTAIRASVDEAS
KSVTYVNSKGEAVNPLGYMVAQIWNNENYIKETGYGAEGEPALCSAFDFP
VRYRVVETFAANENGIGNKGGKWLDEGMNLHRLYPSHAQPNLMLGNHDLV
RFGDLLQRGNIASPEQAEYWERHKAALSFQAAYSGPITLYYGEEIGDELE
GYAQKVEQDCAVQGLCDDHVARTSANIDGLTVNLNEKQRDLKQYVSQLMT
LRAAHPALSRGERTNIVANETVYIDHKQADDDALIYMVSTTADQDTVELK
ASDIASDGQLVDLLTGKVHSAINGEYQISLAPFEAKFLLIETPSASG
Ligand information
Ligand IDGLC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-DVKNGEFBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-glucopyranose;
alpha-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL423707
DrugBank
ZINCZINC000003861213
PDB chain5h05 Chain E Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5h05 Crystal structure of a raw-starch-degrading bacterial alpha-amylase belonging to subfamily 37 of the glycoside hydrolase family GH13
Resolution2.55 Å
Binding residue
(original residue number in PDB)		Y89 H129 D178 Q179 Q221 H296 D297
Binding residue
(residue number reindexed from 1)		Y90 H130 D179 Q180 Q222 H297 D298
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Feb 18 08:20:20 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5h05', asym_id = 'A', bs = 'BS01', title = 'Crystal structure of a raw-starch-degrading bact...family 37 of the glycoside hydrolase family GH13 '
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5h05', asym_id='A', bs='BS01', title='Crystal structure of a raw-starch-degrading bact...family 37 of the glycoside hydrolase family GH13 ')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0005975', uniprot = '', pdbid = '5h05', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0005975', uniprot='', pdbid='5h05', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>