Structure of PDB 5gnx Chain A Binding Site BS01

Receptor Information
>5gnx Chain A (length=451) Species: 256318 (metagenome) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TARSYRFPEGFLWGAATAAYQIEGSSMADGAGESIWDRFSHTPGNMKDGD
TGDVACDHYNRWREDIELMKRLNLQAYRFSVSWSRVIPQGRGAINPKGLA
FYDRLVDGLLEAGIEPLATLYHWDLPAALDDRGGWLNPDIADWFADYGQV
LFEKFKGRVKTWGTINQPWVIVDGGYLHGALAPGHRSAYEAVIAGHNVLR
AHGAAVRRFREVGEGQIGIVLNIEPKYPASDKPEDEAARRRAEAQMNRWF
LDPLMGRGYPEELTDVYGAAWREFPKEDFELIAEPTDWMGLNWYTRAVPE
NAPDAWPTRSRPVRQTQHAHTETGWEVYPPALTDTLVWLSEQTGGKLPLM
VTENGSAWYDPPHAIDGRIHDPMRVHYLQTHIKALHDAIGKGVDLRGYMA
WSLLDNLEWSLGYSKRFGIVHVNFATQERTIKDSGLLYAEVIKTHGDVLN
T
Ligand information
Ligand IDBGC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-VFUOTHLCSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.370OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O
CACTVS 3.370OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.6C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
ACDLabs 12.01OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namebeta-D-glucopyranose;
beta-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL1614854
DrugBankDB02379
ZINCZINC000003833800
PDB chain5gnx Chain A Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5gnx Structures of a glucose-tolerant beta-glucosidase provide insights into its mechanism.
Resolution1.8 Å
Binding residue
(original residue number in PDB)		Q25 H126 Q171 Y298 E357 W405 E412 F421
Binding residue
(residue number reindexed from 1)		Q21 H122 Q167 Y294 E353 W401 E408 F417
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 10:25:18 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5gnx', asym_id = 'A', bs = 'BS01', title = 'Structures of a glucose-tolerant beta-glucosidase provide insights into its mechanism.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5gnx', asym_id='A', bs='BS01', title='Structures of a glucose-tolerant beta-glucosidase provide insights into its mechanism.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0004553,0005975,0008422,0030245', uniprot = '', pdbid = '5gnx', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004553,0005975,0008422,0030245', uniprot='', pdbid='5gnx', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>