Structure of PDB 5fyo Chain A Binding Site BS01

Receptor Information
>5fyo Chain A (length=298) Species: 306 (Pseudomonas sp.) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AQESPAFIDPASWNTPFNGIAQVACHNCYEKQYANTFSSVLDSVRTLELD
FWDQRDAVSGGSPHHWFVRHNPGTLFQSGNDNNCTGDGTGKNDLEACLND
VKNWSDKHPGHFPITLILDKKQGWSKESSGRTPKDFDELVARVFQGKLFT
PQDLATHIGSGAGALQGNLKGKSWPTANDLQGKVLLVLNHSENQKLSQYA
EARTSKAKVFISPVTNGQNDISGKVSGMSSQSSGYVAMNNMGKGDKSWAK
QAFAYSHIGRVWGDDEVSFAQHINQKINLSAYYRFAAQSAGGYRIRPF
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5fyo Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5fyo The structure of a calcium-dependent phosphoinositide-specific phospholipase C from Pseudomonas sp. 62186, the first from a Gram-negative bacterium.
Resolution1.5 Å
Binding residue
(original residue number in PDB)
N27 E48 D50 D119
Binding residue
(residue number reindexed from 1)
N27 E48 D50 D119
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008081 phosphoric diester hydrolase activity
GO:0046872 metal ion binding
Biological Process
GO:0006629 lipid metabolic process

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:5fyo, PDBe:5fyo, PDBj:5fyo
PDBsum5fyo
PubMed28045383
UniProtA0A1S4NYD4

[Back to BioLiP]