Structure of PDB 5fn1 Chain A Binding Site BS01

Receptor Information
>5fn1 Chain A (length=217) Species: 112229 (Pepino mosaic virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GAKAPSDFSNPNTAPSLSDLKKVKYVSTVTSVATPAEIEALGKIFTAMGL
AANETGPAMWDLARAYADVQSSKSAQLIGATPSNPALSRRALAAQFDRIN
ITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFDFFDGVTN
PASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRG
HMGGANTMYAIDAPPEL
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5fn1 The near-atomic cryoEM structure of a flexible filamentous plant virus shows homology of its coat protein with nucleoproteins of animal viruses.
Resolution3.9 Å
Binding residue
(original residue number in PDB)		T50 S51 S92 K93 R124 D163 H192 K196 L200 Q203
Binding residue
(residue number reindexed from 1)		T30 S31 S72 K73 R104 D143 H172 K176 L180 Q183
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5fn1, PDBe:5fn1, PDBj:5fn1
PDBsum5fn1
PubMed26673077
UniProtQ71FK2

[Back to BioLiP]