Structure of PDB 5fjw Chain A Binding Site BS01

Receptor Information
>5fjw Chain A (length=263) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DVPENNGILISIKEVINAEFSRDGTIHSSELKGVLELRINDHDLSHSNLK
LADSIDVRDKSFQFKTHPNIDKQSFLSTKLISLRDKSKAFPANDQSLGVL
RWRKVAPAEDDSLIPLTLTTAVSPSESQQGFDVIIEYESVLETELADVIF
TIPVFPQEPVDINTESSTCSDAEVVNMDQEMGTSIKISKIAANDAGALAF
TIEAPYEDALYPMTVSFQESTRDKLAKSFTGMAIQSVVMANDHDQELPYD
VITSLKSDEYLVQ
Ligand information
>5fjw Chain L (length=9) Species: 4932 (Saccharomyces cerevisiae) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
DDWNWEMED
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5fjw Structural Basis for the Binding of Tryptophan-Based Motifs by Delta-Cop.
Resolution2.8 Å
Binding residue
(original residue number in PDB)		E319 H350 N352 L366 K371 A372 F373 P374 S379 L380 G381 L383 R384
Binding residue
(residue number reindexed from 1)		E36 H67 N69 L83 K88 A89 F90 P91 S96 L97 G98 L100 R101
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
Cellular Component
GO:0030126 COPI vesicle coat

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5fjw, PDBe:5fjw, PDBj:5fjw
PDBsum5fjw
PubMed26578768
UniProtP43621|COPD_YEAST Coatomer subunit delta (Gene Name=RET2)

[Back to BioLiP]