Structure of PDB 5faw Chain A Binding Site BS01

Receptor Information
>5faw Chain A (length=803) Species: 207559 (Oleidesulfovibrio alaskensis G20) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GLVPRGSHMGIPDGPTPRHVKLKENFLKQVPSITVQRAVAITKIAKENPG
LPKPLLRAKTFRYCCETAPLVIQDHELIVGSPNGAPRAGAFSPEVAWRWL
QDELDTIGSRPQDPFYISEEDKKVLREEVFPFWQNKSVDEFCEGQYREAD
LWEMSGESFVSDCSYHAVNGGGDSNPGYDVILMKKGMLDIQREAREKLEQ
LDYANPEDIDKIYFYKSVIETAEGVMIYARRLSAYAAELAARETDPRRKA
ELQKISEVNARVPAHAPSNFWEAIQAVWTVESLLVVEENQTGMSIGRVDQ
YMYPFYRADIDSGRLTEYEAFDLAGCMLVKMSEMMWITSEGASKFFAGYQ
PFVNMCVGGVTREGHDATNDLTYMLMDAVRHVRIYQPTLATRVHNKSPQK
YLKKIVDVIRSGMGFPAVHFDDAHIKMMLAKGVSIEDARDYCLMGCVEPQ
KSGRLYQWASTGYTQWPICIELVLNHGVPLWYGKKVTPDMGDLSQYDTYE
KFEAAVKEQIRWITKNTSVATVISQRAHRELAPKPLMSLMYEGCMESGRD
VSAGGAMYNFGPGVVWSGLATYVDSMAAIKKLVYDDRKYTLAQLNEALKA
DFAGYDQILADCLAAPKYGNDDDYADMIAADLVHFTETEHRKYKTLYSVL
SHGTLSISNNTPFGQLLGASANGRRAWMPLSDGISPTQGADYKGPTAIIK
SVSKMANDNMNIGMVHNFKLMSGLLDTPEGENGLITLIRTACMLGNGEMQ
FNYLDNELLLDAQKHPEKYRDLVVRVAGYSAFFVELCKDVQDEIISRTML
HGF
Ligand information
Ligand IDCHT
InChIInChI=1S/C5H14NO/c1-6(2,3)4-5-7/h7H,4-5H2,1-3H3/q+1
InChIKeyOEYIOHPDSNJKLS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341
OpenEye OEToolkits 1.5.0		C[N+](C)(C)CCO
ACDLabs 10.04OCC[N+](C)(C)C
FormulaC5 H14 N O
NameCHOLINE ION
ChEMBLCHEMBL920
DrugBankDB00122
ZINCZINC000003079337
PDB chain5faw Chain A Residue 908 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5faw Molecular Basis of C-N Bond Cleavage by the Glycyl Radical Enzyme Choline Trimethylamine-Lyase.
Resolution1.852 Å
Binding residue
(original residue number in PDB)		Y208 D216 F395 G488 C489 E491
Binding residue
(residue number reindexed from 1)		Y165 D173 F352 G445 C446 E448
Annotation score5
Enzymatic activity
Catalytic site (original residue number in PDB) F395 G488 C489 G821
Catalytic site (residue number reindexed from 1) F352 G445 C446 G778
Enzyme Commision number 4.3.99.4: choline trimethylamine-lyase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0016829 lyase activity
GO:0016840 carbon-nitrogen lyase activity
GO:0033265 choline binding
GO:0042803 protein homodimerization activity
Biological Process
GO:0042426 choline catabolic process
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5faw, PDBe:5faw, PDBj:5faw
PDBsum5faw
PubMed27642068
UniProtQ30W70|CUTC_OLEA2 Choline trimethylamine-lyase (Gene Name=cutC)

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