Structure of PDB 5f54 Chain A Binding Site BS01

Receptor Information
>5f54 Chain A (length=693) Species: 1299 (Deinococcus radiodurans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PAHWLLAPPASRDALLATMREWQVSPPVAQVLCGRDLRTELLALPLELTP
NPALREAARHIVAAVREGKRIRIHGDYDADGVSATATLVLGLRAIGANVH
GFIPHRLNEGYGIHPDRVPEHAAAADLVVTVDCGVSNLDEVKSLLATGTE
VVVTDHHAPGENFPECLVVHPHLTPDYDPDRHNLTGAGVAYHLLWAVYEE
LGRPEPRALLPLATLGTVADVAPLLGENRALVRAGLAEMARTELPGLRAL
MNEKRVRQPTARDVAFILAPRINAAGRMGEADRALELLTTPSDHEAKSLA
AYLEIRNQERRKIQDDMFAQALQLADPNDPALVLTHDDWHAGVMGIVASK
LVETFNRPVYIVAQGKGSVRSTPGISAVQGLRESRDLLGRFGGHPGAAGF
SLDPQNFGALRERIHGYVRQFPTPVPAVRLDAPLPVAALTPELLSELSIL
EPFGEGNPRPLWHLRGPLTDTRLVGKQGDVLQFRFGGVKGMKYSERDDAA
GERDVAAELALLELHAAALRPLAPLALAGTEEGLPTLPRLNPREAMTFLK
TGAAAYAEQGVATYLRDNVPGLTLLDTNAPHPGGDLILYGLPPESALRRW
LHEAQEQGGRVAFALGPKTLAELDAALTLAKLLPDSHTEAAQEAAADAYR
SWQWAHHYRVLNDAGWSASVYAMLGLPVPAALPKAAEALALAA
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain5f54 Chain A Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5f54 Structural basis for DNA 5 -end resection by RecJ
Resolution2.7 Å
Binding residue
(original residue number in PDB)		D79 D81 D135
Binding residue
(residue number reindexed from 1)		D76 D78 D132
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0004527 exonuclease activity
GO:0008409 5'-3' exonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0006281 DNA repair
GO:0006310 DNA recombination

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Molecular Function
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Biological Process
External links
PDB RCSB:5f54, PDBe:5f54, PDBj:5f54
PDBsum5f54
PubMed27058167
UniProtD0EM60

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