Structure of PDB 5dz2 Chain A Binding Site BS01

Receptor Information
>5dz2 Chain A (length=322) Species: 100226 (Streptomyces coelicolor A3(2)) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QPFQLPHFYLPHPARLNPHLDEARAHSTTWAREMGMLEGSGVWEQSDLEA
HDYGLLCAYTHPDCDGPALSLITDWYVWVFFFDDHFLEKYKRSQDRLAGK
AHLDRLPLFMPLGMPEPRNPVEAGLADLWTRTVPAMSADWRRRFAVATEH
LLNESMWELSNINEGRVANPVEYIEMRRKVGGAPWSAGLVEYATAEVPAA
VAGTRPLRVLMETFSDAVHLRNDLFSYQREVEDEGELSNGVLVLETFFGC
TTQEAADLVNDVLTSRLHQFEHTAFTEVPAVALEKGLTPLEVAAVGAYTK
GLQDWQSGGHEWHMRSSRYMNK
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5dz2 Chain A Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5dz2 Structural Studies of Geosmin Synthase, a Bifunctional Sesquiterpene Synthase with alpha alpha Domain Architecture That Catalyzes a Unique Cyclization-Fragmentation Reaction Sequence.
Resolution2.111 Å
Binding residue
(original residue number in PDB)		N229 S233 E237
Binding residue
(residue number reindexed from 1)		N222 S226 E230
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) V82 F83 D86 L90 I169 R184 G188 N229 S233 R236 E237 E241 W319 H320 R325
Catalytic site (residue number reindexed from 1) V79 F80 D83 L87 I162 R177 G181 N222 S226 R229 E230 E234 W312 H313 R318
Enzyme Commision number 4.1.99.16: geosmin synthase.
4.2.3.22: germacradienol synthase.
4.2.3.75: (-)-germacrene D synthase.
External links
PDB RCSB:5dz2, PDBe:5dz2, PDBj:5dz2
PDBsum5dz2
PubMed26598179
UniProtQ9X839|CYC2_STRCO Germacradienol/geosmin synthase (Gene Name=cyc2)

[Back to BioLiP]