Structure of PDB 5diz Chain A Binding Site BS01

Receptor Information
>5diz Chain A (length=474) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NPETNLLFNLNSCSKSKDLSAALALYDAAITSSEVRLSQQHFQTLLYLCS
ASITDISLQYLAIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDY
AFKVVKEFVSVGGVSIPRLRTYAPALLCFCEKLEAEKGYEVEEHMEAAGI
ALEEAEISALLKVSAATGRENKVYRYLHKLREYVGCVSEETLKIIEEWFC
GEKAGEVGDDVGMLREAVLNNGGGWHGHGWVGEGKWTVKKGNVSSTGRCL
SCSEQLACVDTNEVETQKFVDSLVALAMDRVVFSEFQDWLEKHGDYEAIV
DGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKRRVKT
LLENPTHRNLVEEWISNGVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEM
RDHIFELLGSTFFQKWKERHQVRYTFVKGNLKLEMPSPFSVVIQESEKGS
WHFPVSCENNEESSRTWMCISRQS
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5diz Chain A Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5diz Nuclear Protein-Only Ribonuclease P2 Structure and Biochemical Characterization Provide Insight into the Conserved Properties of tRNA 5' End Processing Enzymes.
Resolution3.2 Å
Binding residue
(original residue number in PDB)		C281 C284 H494 C511
Binding residue
(residue number reindexed from 1)		C249 C252 H452 C469
Annotation score4
Enzymatic activity
Enzyme Commision number 3.1.26.5: ribonuclease P.
Gene Ontology
Molecular Function
GO:0004518 nuclease activity
GO:0004526 ribonuclease P activity
GO:0046872 metal ion binding
Biological Process
GO:0001682 tRNA 5'-leader removal
GO:0006397 mRNA processing
GO:0008033 tRNA processing
GO:0043144 sno(s)RNA processing
Cellular Component
GO:0005634 nucleus
GO:0043231 intracellular membrane-bounded organelle

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5diz, PDBe:5diz, PDBj:5diz
PDBsum5diz
PubMed26655022
UniProtQ680B9|PRRP2_ARATH Proteinaceous RNase P 2 (Gene Name=PRORP2)

[Back to BioLiP]