Structure of PDB 5d4a Chain A Binding Site BS01

Receptor Information
>5d4a Chain A (length=136) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RGSHMCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVN
GDVITIKSESTFKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQ
KWDGKSTTIKRKREDDKLVVECVMKGVTSTRVYERA
Ligand information
Ligand ID57Q
InChIInChI=1S/C17H15NO2/c19-17(20)10-11-18-15-9-5-4-8-14(15)12-16(18)13-6-2-1-3-7-13/h1-9,12H,10-11H2,(H,19,20)
InChIKeyCPWLVJORIJEUHI-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385OC(=O)CCn1c2ccccc2cc1c3ccccc3
ACDLabs 12.01O=C(CCn1c(cc2c1cccc2)c3ccccc3)O
OpenEye OEToolkits 1.9.2c1ccc(cc1)c2cc3ccccc3n2CCC(=O)O
FormulaC17 H15 N O2
Name3-(2-phenyl-1H-indol-1-yl)propanoic acid
ChEMBLCHEMBL1586017
DrugBank
ZINCZINC000000312117
PDB chain5d4a Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5d4a Interaction Analysis of FABP4 Inhibitors by X-ray Crystallography and Fragment Molecular Orbital Analysis
Resolution1.7 Å
Binding residue
(original residue number in PDB)		F16 Y19 P38 F57 D76 R78 R126 Y128
Binding residue
(residue number reindexed from 1)		F21 Y24 P43 F62 D81 R83 R131 Y133
Annotation score1
Binding affinityPDBbind-CN: -logKd/Ki=5.85,Ki>1.4uM
BindingDB: Ki=>1400nM
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005324 long-chain fatty acid transmembrane transporter activity
GO:0005504 fatty acid binding
GO:0008289 lipid binding
GO:0036041 long-chain fatty acid binding
GO:0051427 hormone receptor binding
Biological Process
GO:0009617 response to bacterium
GO:0015908 fatty acid transport
GO:0015909 long-chain fatty acid transport
GO:0042632 cholesterol homeostasis
GO:0045892 negative regulation of DNA-templated transcription
GO:0050729 positive regulation of inflammatory response
GO:0050872 white fat cell differentiation
GO:0050873 brown fat cell differentiation
GO:0071285 cellular response to lithium ion
GO:0071356 cellular response to tumor necrosis factor
GO:0120162 positive regulation of cold-induced thermogenesis
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005811 lipid droplet
GO:0005829 cytosol
GO:0070062 extracellular exosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5d4a, PDBe:5d4a, PDBj:5d4a
PDBsum5d4a
PubMed27096055
UniProtP15090|FABP4_HUMAN Fatty acid-binding protein, adipocyte (Gene Name=FABP4)

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