Structure of PDB 5d1f Chain A Binding Site BS01

Receptor Information
>5d1f Chain A (length=274) Species: 4577 (Zea mays) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DVCEAAGKAIYIVSDGTGWTAEHSVNAALGQFENCLADRGCAVNTHLFSL
IDDMDRLIEVIKQAAKEGALVLYTLADPSMAEATKKACDFWGVPCTDVLR
PTVEAIASHIGVAPSGIPRSSPSRNGRLSEDYFQRIDAIDFTIKQDDGAL
PQNLYRADIVLAGVSRTGKTPLSIYLAQKGYKVANVPIVMGVDLPKSLFE
INQDKVFGLTINPAIEMDHVRQELVHANQIFAQNPSWPVIAVTGKAIEET
AAVILGILHDRKQKCSMPRISKRY
Ligand information
Ligand IDAMP
InChIInChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyUDMBCSSLTHHNCD-KQYNXXCUSA-N
SMILES
SoftwareSMILES
CACTVS 3.370Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O
CACTVS 3.370Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.7.6c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N
ACDLabs 12.01O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.7.6c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)N
FormulaC10 H14 N5 O7 P
NameADENOSINE MONOPHOSPHATE
ChEMBLCHEMBL752
DrugBankDB00131
ZINCZINC000003860156
PDB chain5d1f Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5d1f Structural Basis of Reversible Phosphorylation by Maize Pyruvate Orthophosphate Dikinase Regulatory Protein
Resolution3.4 Å
Binding residue
(original residue number in PDB)		S144 D145 T147 G148 T150 T204 P248 R249
Binding residue
(residue number reindexed from 1)		S14 D15 T17 G18 T20 T74 P118 R119
Annotation score5
Enzymatic activity
Enzyme Commision number 2.7.11.32: [pyruvate, phosphate dikinase] kinase.
2.7.4.27: ([Pyruvate, phosphate dikinase] phosphate) phosphotransferase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0004674 protein serine/threonine kinase activity
GO:0005524 ATP binding
GO:0016772 transferase activity, transferring phosphorus-containing groups
GO:0016776 phosphotransferase activity, phosphate group as acceptor
Biological Process
GO:0016310 phosphorylation
Cellular Component
GO:0009507 chloroplast
GO:0009570 chloroplast stroma

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5d1f, PDBe:5d1f, PDBj:5d1f
PDBsum5d1f
PubMed26620526
UniProtQ195N6|PDRP1_MAIZE Pyruvate, phosphate dikinase regulatory protein, chloroplastic (Gene Name=PDRP1)

[Back to BioLiP]